Plewczynski D - Search Results

1

ConsensuSV-ONT - a modern method for accurate structural variant calling.

Pietryga A, Chilinski M, Gadakh S, Plewczynski D. Pietryga A, et al. Among authors: plewczynski d. bioRxiv [Preprint]. 2024 Jul 26:2024.07.26.605267. doi: 10.1101/2024.07.26.605267. bioRxiv. 2024. PMID: 39211254 Free PMC article. Preprint.

2

Correction to: 3dSpAn: An interactive software for 3D segmentation and analysis of dendritic spines.

Das N, Baczynska E, Bijata M, Ruszczycki B, Zeug A, Plewczynski D, Saha PK, Ponimaskin E, Wlodarczyk J, Basu S. Das N, et al. Among authors: plewczynski d. Neuroinformatics. 2022 Jul;20(3):699. doi: 10.1007/s12021-022-09589-0. Neuroinformatics. 2022. PMID: 35648272 No abstract available.

3

Promoter-pervasive transcription causes RNA polymerase II pausing to boost DOG1 expression in response to salt.

Montez M, Majchrowska M, Krzyszton M, Bokota G, Sacharowski S, Wrona M, Yatusevich R, Massana F, Plewczynski D, Swiezewski S. Montez M, et al. Among authors: plewczynski d. EMBO J. 2023 Mar 1;42(5):e112443. doi: 10.15252/embj.2022112443. Epub 2023 Jan 27. EMBO J. 2023. PMID: 36705062 Free PMC article.

4

AMS 4.0: consensus prediction of post-translational modifications in protein sequences.

Plewczynski D, Basu S, Saha I. Plewczynski D, et al. Amino Acids. 2012 Aug;43(2):573-82. doi: 10.1007/s00726-012-1290-2. Epub 2012 May 4. Amino Acids. 2012. PMID: 22555647 Free PMC article.

5

The Mixture of Autoregressive Hidden Markov Models of Morphology for Dentritic Spines During Activation Process.

Urban P, Rezaei Tabar V, Denkiewicz M, Bokota G, Das N, Basu S, Plewczynski D. Urban P, et al. Among authors: plewczynski d. J Comput Biol. 2020 Sep;27(9):1471-1485. doi: 10.1089/cmb.2019.0383. Epub 2020 Mar 12. J Comput Biol. 2020. PMID: 32175768 Free PMC article.

6

Assessing different classification methods for virtual screening.

Plewczynski D, Spieser SA, Koch U. Plewczynski D, et al. J Chem Inf Model. 2006 May-Jun;46(3):1098-106. doi: 10.1021/ci050519k. J Chem Inf Model. 2006. PMID: 16711730

7

HarmonyDOCK: the structural analysis of poses in protein-ligand docking.

Plewczynski D, Philips A, Von Grotthuss M, Rychlewski L, Ginalski K. Plewczynski D, et al. J Comput Biol. 2014 Mar;21(3):247-56. doi: 10.1089/cmb.2009.0111. Epub 2010 Nov 20. J Comput Biol. 2014. PMID: 21091053

8

PSP_MCSVM: brainstorming consensus prediction of protein secondary structures using two-stage multiclass support vector machines.

Chatterjee P, Basu S, Kundu M, Nasipuri M, Plewczynski D. Chatterjee P, et al. Among authors: plewczynski d. J Mol Model. 2011 Sep;17(9):2191-201. doi: 10.1007/s00894-011-1102-8. Epub 2011 May 19. J Mol Model. 2011. PMID: 21594694 Free PMC article.

9

Improved differential evolution for microarray analysis.

Saha I, Plewczynski D, Maulik U, Bandyopadhyay S. Saha I, et al. Among authors: plewczynski d. Int J Data Min Bioinform. 2012;6(1):86-103. doi: 10.1504/ijdmb.2012.045542. Int J Data Min Bioinform. 2012. PMID: 22479820

10

kNNsim: k-nearest neighbors similarity with genetic algorithm features optimization enhances the prediction of activity classes for small molecules.

Plewczynski D. Plewczynski D. J Mol Model. 2009 Jun;15(6):591-6. doi: 10.1007/s00894-008-0349-1. Epub 2008 Jul 29. J Mol Model. 2009. PMID: 18663491

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