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Mouse embryo CoCoPUTs: novel murine transcriptomic-weighted usage website featuring multiple strains, tissues, and stages.
Fumagalli SE, Smith S, Ghazanchyan T, Meyer D, Paul R, Campbell C, Santana-Quintero L, Golikov A, Ibla J, Bar H, Komar AA, Hunt RC, Lin B, DiCuccio M, Kimchi-Sarfaty C. Fumagalli SE, et al. Among authors: santana quintero l. BMC Bioinformatics. 2024 Sep 6;25(1):294. doi: 10.1186/s12859-024-05906-3. BMC Bioinformatics. 2024. PMID: 39242990 Free PMC article.
A new and updated resource for codon usage tables.
Athey J, Alexaki A, Osipova E, Rostovtsev A, Santana-Quintero LV, Katneni U, Simonyan V, Kimchi-Sarfaty C. Athey J, et al. BMC Bioinformatics. 2017 Sep 2;18(1):391. doi: 10.1186/s12859-017-1793-7. BMC Bioinformatics. 2017. PMID: 28865429 Free PMC article.
Methodology for Good Machine Learning with Multi-Omics Data.
Coroller T, Sahiner B, Amatya A, Gossmann A, Karagiannis K, Moloney C, Samala RK, Santana-Quintero L, Solovieff N, Wang C, Amiri-Kordestani L, Cao Q, Cha KH, Charlab R, Cross FH Jr, Hu T, Huang R, Kraft J, Krusche P, Li Y, Li Z, Mazo I, Paul R, Schnakenberg S, Serra P, Smith S, Song C, Su F, Tiwari M, Vechery C, Xiong X, Zarate JP, Zhu H, Chakravartty A, Liu Q, Ohlssen D, Petrick N, Schneider JA, Walderhaug M, Zuber E. Coroller T, et al. Among authors: santana quintero l. Clin Pharmacol Ther. 2024 Apr;115(4):745-757. doi: 10.1002/cpt.3105. Epub 2024 Jan 31. Clin Pharmacol Ther. 2024. PMID: 37965805
Multiplex detection and identification of viral, bacterial, and protozoan pathogens in human blood and plasma using an expanded high-density resequencing microarray platform.
Kourout M, Espich S, Fisher C, Tiper I, Purkayastha A, Smith S, Santana-Quintero L, Duncan R. Kourout M, et al. Among authors: santana quintero l. Front Mol Biosci. 2024 Jun 20;11:1419213. doi: 10.3389/fmolb.2024.1419213. eCollection 2024. Front Mol Biosci. 2024. PMID: 38966129 Free PMC article.
High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis.
Simonyan V, Chumakov K, Dingerdissen H, Faison W, Goldweber S, Golikov A, Gulzar N, Karagiannis K, Vinh Nguyen Lam P, Maudru T, Muravitskaja O, Osipova E, Pan Y, Pschenichnov A, Rostovtsev A, Santana-Quintero L, Smith K, Thompson EE, Tkachenko V, Torcivia-Rodriguez J, Voskanian A, Wan Q, Wang J, Wu TJ, Wilson C, Mazumder R. Simonyan V, et al. Database (Oxford). 2016 Mar 17;2016:baw022. doi: 10.1093/database/baw022. Print 2016. Database (Oxford). 2016. PMID: 26989153 Free PMC article.
17 results