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EnzChemRED, a rich enzyme chemistry relation extraction dataset.
Lai PT, Coudert E, Aimo L, Axelsen K, Breuza L, de Castro E, Feuermann M, Morgat A, Pourcel L, Pedruzzi I, Poux S, Redaschi N, Rivoire C, Sveshnikova A, Wei CH, Leaman R, Luo L, Lu Z, Bridge A. Lai PT, et al. Among authors: rivoire c. Sci Data. 2024 Sep 9;11(1):982. doi: 10.1038/s41597-024-03835-7. Sci Data. 2024. PMID: 39251610 Free PMC article.
HAMAP in 2013, new developments in the protein family classification and annotation system.
Pedruzzi I, Rivoire C, Auchincloss AH, Coudert E, Keller G, de Castro E, Baratin D, Cuche BA, Bougueleret L, Poux S, Redaschi N, Xenarios I, Bridge A; UniProt Consortium. Pedruzzi I, et al. Among authors: rivoire c. Nucleic Acids Res. 2013 Jan;41(Database issue):D584-9. doi: 10.1093/nar/gks1157. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193261 Free PMC article.
HAMAP in 2015: updates to the protein family classification and annotation system.
Pedruzzi I, Rivoire C, Auchincloss AH, Coudert E, Keller G, de Castro E, Baratin D, Cuche BA, Bougueleret L, Poux S, Redaschi N, Xenarios I, Bridge A. Pedruzzi I, et al. Among authors: rivoire c. Nucleic Acids Res. 2015 Jan;43(Database issue):D1064-70. doi: 10.1093/nar/gku1002. Epub 2014 Oct 27. Nucleic Acids Res. 2015. PMID: 25348399 Free PMC article.
FAIR adoption, assessment and challenges at UniProt.
Garcia L, Bolleman J, Gehant S, Redaschi N, Martin M; UniProt Consortium. Garcia L, et al. Sci Data. 2019 Sep 20;6(1):175. doi: 10.1038/s41597-019-0180-9. Sci Data. 2019. PMID: 31541106 Free PMC article.
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.
MacDougall A, Volynkin V, Saidi R, Poggioli D, Zellner H, Hatton-Ellis E, Joshi V, O'Donovan C, Orchard S, Auchincloss AH, Baratin D, Bolleman J, Coudert E, de Castro E, Hulo C, Masson P, Pedruzzi I, Rivoire C, Arighi C, Wang Q, Chen C, Huang H, Garavelli J, Vinayaka CR, Yeh LS, Natale DA, Laiho K, Martin MJ, Renaux A, Pichler K; UniProt Consortium. MacDougall A, et al. Among authors: rivoire c. Bioinformatics. 2020 Nov 1;36(17):4643-4648. doi: 10.1093/bioinformatics/btaa485. Bioinformatics. 2020. PMID: 32399560 Free PMC article.
Annotation of biologically relevant ligands in UniProtKB using ChEBI.
Coudert E, Gehant S, de Castro E, Pozzato M, Baratin D, Neto T, Sigrist CJA, Redaschi N, Bridge A; UniProt Consortium. Coudert E, et al. Bioinformatics. 2023 Jan 1;39(1):btac793. doi: 10.1093/bioinformatics/btac793. Bioinformatics. 2023. PMID: 36484697 Free PMC article.
EnzChemRED, a rich enzyme chemistry relation extraction dataset.
Lai PT, Coudert E, Aimo L, Axelsen K, Breuza L, de Castro E, Feuermann M, Morgat A, Pourcel L, Pedruzzi I, Poux S, Redaschi N, Rivoire C, Sveshnikova A, Wei CH, Leaman R, Luo L, Lu Z, Bridge A. Lai PT, et al. Among authors: rivoire c. ArXiv [Preprint]. 2024 Apr 22:arXiv:2404.14209v1. ArXiv. 2024. Update in: Sci Data. 2024 Sep 9;11(1):982. doi: 10.1038/s41597-024-03835-7 PMID: 38903736 Free PMC article. Updated. Preprint.
53 results