Sachsenberg T - Search Results

1

Chemical crosslinking extends and complements UV crosslinking in analysis of RNA/DNA nucleic acid-protein interaction sites by mass spectrometry.

Welp LM, Sachsenberg T, Wulf A, Chernev A, Horokhovskyi Y, Neumann P, Pašen M, Siraj A, Raabe M, Johannsson S, Schmitzova J, Netz E, Pfeuffer J, He Y, Fritzemeier K, Delanghe B, Viner R, Vos SM, Cramer P, Ficner R, Liepe J, Kohlbacher O, Urlaub H. Welp LM, et al. Among authors: sachsenberg t. bioRxiv [Preprint]. 2024 Aug 29:2024.08.29.610268. doi: 10.1101/2024.08.29.610268. bioRxiv. 2024. PMID: 39257782 Free PMC article. Preprint.

2

Analysis of protein-DNA interactions in chromatin by UV induced cross-linking and mass spectrometry.

Stützer A, Welp LM, Raabe M, Sachsenberg T, Kappert C, Wulf A, Lau AM, David SS, Chernev A, Kramer K, Politis A, Kohlbacher O, Fischle W, Urlaub H. Stützer A, et al. Among authors: sachsenberg t. Nat Commun. 2020 Oct 16;11(1):5250. doi: 10.1038/s41467-020-19047-7. Nat Commun. 2020. PMID: 33067435 Free PMC article.

3

Intensity and retention time prediction improves the rescoring of protein-nucleic acid cross-links.

Siraj A, Bouwmeester R, Declercq A, Welp L, Chernev A, Wulf A, Urlaub H, Martens L, Degroeve S, Kohlbacher O, Sachsenberg T. Siraj A, et al. Among authors: sachsenberg t. Proteomics. 2024 Apr;24(8):e2300144. doi: 10.1002/pmic.202300144. Proteomics. 2024. PMID: 38629965

4

Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins.

Kramer K, Sachsenberg T, Beckmann BM, Qamar S, Boon KL, Hentze MW, Kohlbacher O, Urlaub H. Kramer K, et al. Among authors: sachsenberg t. Nat Methods. 2014 Oct;11(10):1064-70. doi: 10.1038/nmeth.3092. Epub 2014 Aug 31. Nat Methods. 2014. PMID: 25173706 Free PMC article.

5

LFQProfiler and RNP(xl): Open-Source Tools for Label-Free Quantification and Protein-RNA Cross-Linking Integrated into Proteome Discoverer.

Veit J, Sachsenberg T, Chernev A, Aicheler F, Urlaub H, Kohlbacher O. Veit J, et al. Among authors: sachsenberg t. J Proteome Res. 2016 Sep 2;15(9):3441-8. doi: 10.1021/acs.jproteome.6b00407. Epub 2016 Aug 10. J Proteome Res. 2016. PMID: 27476824

6

Analysis of protein-RNA interactions in CRISPR proteins and effector complexes by UV-induced cross-linking and mass spectrometry.

Sharma K, Hrle A, Kramer K, Sachsenberg T, Staals RH, Randau L, Marchfelder A, van der Oost J, Kohlbacher O, Conti E, Urlaub H. Sharma K, et al. Among authors: sachsenberg t. Methods. 2015 Nov 1;89:138-48. doi: 10.1016/j.ymeth.2015.06.005. Epub 2015 Jun 10. Methods. 2015. PMID: 26071038

7

Dithiothreitol (DTT) Acts as a Specific, UV-inducible Cross-linker in Elucidation of Protein-RNA Interactions.

Zaman U, Richter FM, Hofele R, Kramer K, Sachsenberg T, Kohlbacher O, Lenz C, Urlaub H. Zaman U, et al. Among authors: sachsenberg t. Mol Cell Proteomics. 2015 Dec;14(12):3196-210. doi: 10.1074/mcp.M115.052795. Epub 2015 Oct 8. Mol Cell Proteomics. 2015. PMID: 26450613 Free PMC article.

8

OpenPepXL: An Open-Source Tool for Sensitive Identification of Cross-Linked Peptides in XL-MS.

Netz E, Dijkstra TMH, Sachsenberg T, Zimmermann L, Walzer M, Monecke T, Ficner R, Dybkov O, Urlaub H, Kohlbacher O. Netz E, et al. Among authors: sachsenberg t. Mol Cell Proteomics. 2020 Dec;19(12):2157-2168. doi: 10.1074/mcp.TIR120.002186. Epub 2020 Oct 16. Mol Cell Proteomics. 2020. PMID: 33067342 Free PMC article.

9

Differential Enzymatic ¹⁶O/¹⁸O Labeling for the Detection of Cross-Linked Nucleic Acid-Protein Heteroconjugates.

Flett FJ, Sachsenberg T, Kohlbacher O, Mackay CL, Interthal H. Flett FJ, et al. Among authors: sachsenberg t. Anal Chem. 2017 Nov 7;89(21):11208-11213. doi: 10.1021/acs.analchem.7b01625. Epub 2017 Oct 13. Anal Chem. 2017. PMID: 28885003 Free article.

10

A computational platform for high-throughput analysis of RNA sequences and modifications by mass spectrometry.

Wein S, Andrews B, Sachsenberg T, Santos-Rosa H, Kohlbacher O, Kouzarides T, Garcia BA, Weisser H. Wein S, et al. Among authors: sachsenberg t. Nat Commun. 2020 Feb 17;11(1):926. doi: 10.1038/s41467-020-14665-7. Nat Commun. 2020. PMID: 32066737 Free PMC article.

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