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Page 1
Genomic analysis of the early COVID-19 pandemic in Haiti reveals Caribbean-specific variant dynamics.
Mushegian A, Kreitman A, Nelson MI, Chung M, Mederos C, Roder A, Banakis S, Desormeaux AM, Jean Charles NL, Grant-Greene Y, Marseille S, Pierre K, Lafontant D, Boncy J, Journel I, Buteau J, Juin S, Ghedin E. Mushegian A, et al. Among authors: banakis s. PLOS Glob Public Health. 2024 Nov 20;4(11):e0003536. doi: 10.1371/journal.pgph.0003536. eCollection 2024. PLOS Glob Public Health. 2024. PMID: 39565753 Free PMC article.
Emergence of transmissible SARS-CoV-2 variants with decreased sensitivity to antivirals in immunocompromised patients with persistent infections.
Nooruzzaman M, Johnson KEE, Rani R, Finkelsztein EJ, Caserta LC, Kodiyanplakkal RP, Wang W, Hsu J, Salpietro MT, Banakis S, Albert J, Westblade LF, Zanettini C, Marchionni L, Soave R, Ghedin E, Diel DG, Salvatore M. Nooruzzaman M, et al. Among authors: banakis s. Nat Commun. 2024 Sep 18;15(1):7999. doi: 10.1038/s41467-024-51924-3. Nat Commun. 2024. PMID: 39294134 Free PMC article.
CD4+ and CD8+ T cells are required to prevent SARS-CoV-2 persistence in the nasal compartment.
Kar M, Johnson KEE, Vanderheiden A, Elrod EJ, Floyd K, Geerling E, Stone ET, Salinas E, Banakis S, Wang W, Sathish S, Shrihari S, Davis-Gardner ME, Kohlmeier J, Pinto A, Klein R, Grakoui A, Ghedin E, Suthar MS. Kar M, et al. Among authors: banakis s. Sci Adv. 2024 Aug 23;10(34):eadp2636. doi: 10.1126/sciadv.adp2636. Epub 2024 Aug 23. Sci Adv. 2024. PMID: 39178263 Free PMC article.
Emergence of transmissible SARS-CoV-2 variants with decreased sensitivity to antivirals in immunocompromised patients with persistent infections.
Nooruzzaman M, Johnson KEE, Rani R, Finkelsztein EJ, Caserta LC, Kodiyanplakkal RP, Wang W, Hsu J, Salpietro MT, Banakis S, Albert J, Westblade L, Zanettini C, Marchionni L, Soave R, Ghedin E, Diel DG, Salvatore M. Nooruzzaman M, et al. Among authors: banakis s. medRxiv [Preprint]. 2024 Jun 18:2024.06.14.24308523. doi: 10.1101/2024.06.14.24308523. medRxiv. 2024. Update in: Nat Commun. 2024 Sep 18;15(1):7999. doi: 10.1038/s41467-024-51924-3 PMID: 38946967 Free PMC article. Updated. Preprint.
CD4+ and CD8+ T cells are required to prevent SARS-CoV-2 persistence in the nasal compartment.
Kar M, Johnson KEE, Vanderheiden A, Elrod EJ, Floyd K, Geerling E, Stone ET, Salinas E, Banakis S, Wang W, Sathish S, Shrihari S, Davis-Gardner ME, Kohlmeier J, Pinto A, Klein R, Grakoui A, Ghedin E, Suthar MS. Kar M, et al. Among authors: banakis s. bioRxiv [Preprint]. 2024 Jan 24:2024.01.23.576505. doi: 10.1101/2024.01.23.576505. bioRxiv. 2024. Update in: Sci Adv. 2024 Aug 23;10(34):eadp2636. doi: 10.1126/sciadv.adp2636 PMID: 38410446 Free PMC article. Updated. Preprint.
Optimized quantification of intra-host viral diversity in SARS-CoV-2 and influenza virus sequence data.
Roder AE, Johnson KEE, Knoll M, Khalfan M, Wang B, Schultz-Cherry S, Banakis S, Kreitman A, Mederos C, Youn JH, Mercado R, Wang W, Chung M, Ruchnewitz D, Samanovic MI, Mulligan MJ, Lässig M, Luksza M, Das S, Gresham D, Ghedin E. Roder AE, et al. Among authors: banakis s. mBio. 2023 Aug 31;14(4):e0104623. doi: 10.1128/mbio.01046-23. Epub 2023 Jun 30. mBio. 2023. PMID: 37389439 Free PMC article.
Successful lung transplantation using an allograft from a COVID-19-recovered donor: a potential role for subgenomic RNA to guide organ utilization.
Saharia KK, Ramelli SC, Stein SR, Roder AE, Kreitman A, Banakis S, Chung JY, Burbelo PD, Singh M, Reed RM, Patel V, Rabin J, Krupnick AS, Cohen JI, de Wit E, Ghedin E, Hewitt SM, Vannella KM, Chertow DS, Grazioli A. Saharia KK, et al. Among authors: banakis s. Am J Transplant. 2023 Jan;23(1):101-107. doi: 10.1016/j.ajt.2022.09.001. Epub 2023 Jan 11. Am J Transplant. 2023. PMID: 36695611 Free PMC article.
Optimized Quantification of Intrahost Viral Diversity in SARS-CoV-2 and Influenza Virus Sequence Data.
Roder AE, Johnson K, Knoll M, Khalfan M, Wang B, Schultz-Cherry S, Banakis S, Kreitman A, Mederos C, Youn JH, Mercado R, Wang W, Ruchnewitz D, Samanovic MI, Mulligan MJ, Lassig M, Åuksza M, Das S, Gresham D, Ghedin E. Roder AE, et al. Among authors: banakis s. bioRxiv [Preprint]. 2022 Aug 16:2021.05.05.442873. doi: 10.1101/2021.05.05.442873. bioRxiv. 2022. Update in: mBio. 2023 Aug 31;14(4):e0104623. doi: 10.1128/mbio.01046-23 PMID: 36656775 Free PMC article. Updated. Preprint.
Year-long COVID-19 infection reveals within-host evolution of SARS-CoV-2 in a patient with B cell depletion.
Nussenblatt V, Roder AE, Das S, de Wit E, Youn JH, Banakis S, Mushegian A, Mederos C, Wang W, Chung M, Pérez-Pérez L, Palmore T, Brudno JN, Kochenderfer JN, Ghedin E. Nussenblatt V, et al. Among authors: banakis s. medRxiv [Preprint]. 2021 Oct 5:2021.10.02.21264267. doi: 10.1101/2021.10.02.21264267. medRxiv. 2021. Update in: J Infect Dis. 2022 Apr 1;225(7):1118-1123. doi: 10.1093/infdis/jiab622 PMID: 34642697 Free PMC article. Updated. Preprint.
14 results