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Analysis and visualization of quantitative proteomics data using FragPipe-Analyst.
Hsiao Y, Zhang H, Li GX, Deng Y, Yu F, Kahrood HV, Steele JR, Schittenhelm RB, Nesvizhskii AI. Hsiao Y, et al. Among authors: nesvizhskii ai. bioRxiv [Preprint]. 2024 Mar 10:2024.03.05.583643. doi: 10.1101/2024.03.05.583643. bioRxiv. 2024. Update in: J Proteome Res. 2024 Oct 4;23(10):4303-4315. doi: 10.1021/acs.jproteome.4c00294 PMID: 38496650 Free PMC article. Updated. Preprint.
Quantitative proteome-wide O-glycoproteomics analysis with FragPipe.
Polasky DA, Lu L, Yu F, Li K, Shortreed MR, Smith LM, Nesvizhskii AI. Polasky DA, et al. Among authors: nesvizhskii ai. Anal Bioanal Chem. 2024 Jun 15:10.1007/s00216-024-05382-x. doi: 10.1007/s00216-024-05382-x. Online ahead of print. Anal Bioanal Chem. 2024. PMID: 38877149
Are Internal Fragments Observable in Electron Based Top-Down Mass Spectrometry?
Mikawy NN, Rojas Ramírez C, DeFiglia SA, Szot CW, Le J, Lantz C, Wei B, Zenaidee MA, Blakney GT, Nesvizhskii AI, Loo JA, Ruotolo BT, Shabanowitz J, Anderson LC, Håkansson K. Mikawy NN, et al. Among authors: nesvizhskii ai. Mol Cell Proteomics. 2024 Sep;23(9):100814. doi: 10.1016/j.mcpro.2024.100814. Epub 2024 Jul 17. Mol Cell Proteomics. 2024. PMID: 39029587 Free PMC article.
Mapping Nanoscale-To-Single-Cell Phosphoproteomic Landscape by Chip-DIA.
Muneer G, Gebreyesus ST, Chen CS, Lee TT, Yu F, Lin CA, Hsieh MS, Nesvizhskii AI, Ho CC, Yu SL, Tu HL, Chen YJ. Muneer G, et al. Among authors: nesvizhskii ai. Adv Sci (Weinh). 2025 Jan;12(1):e2402421. doi: 10.1002/advs.202402421. Epub 2024 Oct 14. Adv Sci (Weinh). 2025. PMID: 39401432
Comprehensive proteogenomic characterization of rare kidney tumors.
Li GX, Chen L, Hsiao Y, Mannan R, Zhang Y, Luo J, Petralia F, Cho H, Hosseini N, Leprevost FDV, Calinawan A, Li Y, Anand S, Dagar A, Geffen Y, Kumar-Sinha C, Chugh S, Le A, Ponce S, Guo S, Zhang C, Schnaubelt M, Al Deen NN, Chen F, Caravan W, Houston A, Hopkins A, Newton CJ, Wang X, Polasky DA, Haynes S, Yu F, Jing X, Chen S, Robles AI, Mesri M, Thiagarajan M, An E, Getz GA, Linehan WM, Hostetter G, Jewell SD, Chan DW, Wang P, Omenn GS, Mehra R, Ricketts CJ, Ding L, Chinnaiyan AM, Cieslik MP, Dhanasekaran SM, Zhang H, Nesvizhskii AI; Clinical Proteomic Tumor Analysis Consortium. Li GX, et al. Among authors: nesvizhskii ai. Cell Rep Med. 2024 May 21;5(5):101547. doi: 10.1016/j.xcrm.2024.101547. Epub 2024 May 3. Cell Rep Med. 2024. PMID: 38703764 Free PMC article.
232 results