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Implementing a national programme of pathogen genomics for public health: the Australian Pathogen Genomics Program (AusPathoGen).
Webb JR, Andersson P, Sim E, Zahedi A, Donald A, Hoang T, Watt AE, Agius JE, Donato CM, Cummins ML, Zulfiqar T, Nghiem S, Lin C, Menouhos D, Leong LEX, Baird R, Kennedy K, Cooley L, Speers D, Lim CK, de Ligt J, Ferdinand A, Glass K, Kirk MD, Djordjevic SP, Sloggett C, Horan K, Seemann T, Sintchenko V, Jennison AV, Howden BP; AusPathoGen Program partners. Webb JR, et al. Among authors: cooley l. Lancet Microbe. 2024 Oct 7:100969. doi: 10.1016/j.lanmic.2024.100969. Online ahead of print. Lancet Microbe. 2024. PMID: 39389079 Free article. Review.
Australian Staphylococcus aureus Sepsis Outcome Programme annual report, 2013.
Coombs GW, Nimmo GR, Daly DA, Le TT, Pearson JC, Tan HL, Robinson JO, Collignon PJ, McLaws ML, Turnidge JD; Australian Group on Antimicrobial Resistance. Coombs GW, et al. Commun Dis Intell Q Rep. 2014 Dec 31;38(4):E309-19. Commun Dis Intell Q Rep. 2014. PMID: 25631593 Free article.
Australian Enterococcal Sepsis Outcome Programme annual report, 2013.
Coombs GW, Pearson JC, Daly DA, Le TT, Robinson JO, Gottlieb T, Howden BP, Johnson PD, Bennett CM, Stinear TP, Turnidge JD; Australian Group on Antimicrobial Resistance. Coombs GW, et al. Commun Dis Intell Q Rep. 2014 Dec 31;38(4):E320-6. Commun Dis Intell Q Rep. 2014. PMID: 25631594 Free article.
The new screening program to prevent cervical cancer using HPV DNA: getting the balance right in maintaining quality.
Garland SM, Dimech W, Collignon P; Australian Clinical Microbiologists Infectious Diseases Group; Cooley L, Nimmo GR, Smith DW, Baird R, Rawlinson W, Costa AM, Higgins G. Garland SM, et al. Among authors: cooley l. J Pathol Clin Res. 2018 Oct;4(4):207-212. doi: 10.1002/cjp2.110. Epub 2018 Sep 11. J Pathol Clin Res. 2018. PMID: 30058126 Free PMC article.
Genomics-informed responses in the elimination of COVID-19 in Victoria, Australia: an observational, genomic epidemiological study.
Lane CR, Sherry NL, Porter AF, Duchene S, Horan K, Andersson P, Wilmot M, Turner A, Dougall S, Johnson SA, Sait M, Gonçalves da Silva A, Ballard SA, Hoang T, Stinear TP, Caly L, Sintchenko V, Graham R, McMahon J, Smith D, Leong LE, Meumann EM, Cooley L, Schwessinger B, Rawlinson W, van Hal SJ, Stephens N, Catton M, Looker C, Crouch S, Sutton B, Alpren C, Williamson DA, Seemann T, Howden BP. Lane CR, et al. Among authors: cooley l. Lancet Public Health. 2021 Aug;6(8):e547-e556. doi: 10.1016/S2468-2667(21)00133-X. Epub 2021 Jul 10. Lancet Public Health. 2021. PMID: 34252365 Free PMC article.
COVID-19: Integrating genomic and epidemiological data to inform public health interventions and policy in Tasmania, Australia.
Stephens N, McPherson M, Cooley L, Vanhaeften R, Wilmot M, Lane C, Harlock M, Lodo K, Castree N, Seemann T, Sait M, Ballard S, Horan K, Veitch M, Johnston F, Sherry N, Howden B. Stephens N, et al. Among authors: cooley l. Western Pac Surveill Response J. 2021 Dec 22;12(4):1-9. doi: 10.5365/wpsar.2021.12.4.878. eCollection 2021 Oct-Dec. Western Pac Surveill Response J. 2021. PMID: 35251740 Free PMC article.
Global disparities in SARS-CoV-2 genomic surveillance.
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C; Bulgarian SARS-CoV-2 sequencing group; Communicable Diseases Genomics Network (Australia and New Zealand); COVID-19 Impact Project; Danish Covid-19 Genome Consortium; Fiocruz COVID-19 Genomic Surveillance Network; GISAID core curation team; Network for Genomic Surveillance in South Africa (NGS-SA); Swiss SARS-CoV-2 Sequencing Consortium; Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Branda B, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. Brito AF, et al. Nat Commun. 2022 Nov 16;13(1):7003. doi: 10.1038/s41467-022-33713-y. Nat Commun. 2022. PMID: 36385137 Free PMC article.
The use of whole genome sequencing for tuberculosis public health activities in Australia: a joint statement of the National Tuberculosis Advisory Committee and Communicable Diseases Genomics Network.
Donnan EJ, Marais BJ, Coulter C, Waring J, Bastian I, Williamson DA, Sherry NL, Bond K, Sintchenko V, Meumann EM, Horan K, Cooley L, Denholm JT. Donnan EJ, et al. Among authors: cooley l. Commun Dis Intell (2018). 2023 Feb 28;47. doi: 10.33321/cdi.2023.47.8. Commun Dis Intell (2018). 2023. PMID: 36850064 Free article. No abstract available.
Genomic Surveillance of Invasive Meningococcal Disease During a National MenW Outbreak in Australia, 2017-2018.
Sotheran E, Lane CR, Horan K, Stevens K, Guglielmino C, Bradbury S, Kennedy K, Cooley L, McEwan B, Kahler CM, Mowlaboccus S, Speers DJ, Baird R, Freeman K, Leong L, Warner M, Williamson DA, McVernon J, Lahra M, Jennison AV, Howden BP, Andersson P. Sotheran E, et al. Among authors: cooley l. Open Forum Infect Dis. 2024 May 2;11(6):ofae249. doi: 10.1093/ofid/ofae249. eCollection 2024 Jun. Open Forum Infect Dis. 2024. PMID: 38854393 Free PMC article.
326 results