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Page 1
Somatic mitochondrial DNA mutations are a source of heterogeneity among primary leukemic cells.
McCastlain K, Welsh C, Ni Y, Ding L, Franco M, Autry R, Sejdiu B, Chang TC, Chen W, Wu H, Pan Q, Gonzalez-Pena V, Schreiner P, Arunachalam S, Joo J, Li B, Shen S, Brady S, Zhang J, Gawad C, Evans W, Babu MM, Khrapko K, Wu G, Yu J, Pounds S, Kundu M. McCastlain K, et al. Among authors: pounds s. medRxiv [Preprint]. 2024 Sep 27:2024.09.26.24314381. doi: 10.1101/2024.09.26.24314381. medRxiv. 2024. PMID: 39398996 Free PMC article. Preprint.
Bootstrap Evaluation of Association Matrices (BEAM) for Integrating Multiple Omics Profiles with Multiple Outcomes.
Seffernick AE, Cao X, Cheng C, Yang W, Autry RJ, Yang JJ, Pui CH, Teachey DT, Lamba JK, Mullighan CG, Pounds SB. Seffernick AE, et al. bioRxiv [Preprint]. 2024 Aug 3:2024.07.31.605805. doi: 10.1101/2024.07.31.605805. bioRxiv. 2024. PMID: 39131398 Free PMC article. Preprint.
The R package is available from CRAN at: https://cran.r-project.org/package=BEAMR. CONTACT: Stanley.Pounds@stjude.org. SUPPLEMENTARY INFORMATION: Supplementary data are available at the journal's website....
The R package is available from CRAN at: https://cran.r-project.org/package=BEAMR. CONTACT: Stanley.Pounds@stjude.org. SUPPLEMENTARY …
Reply to: Accurate Determinants of Outcome in ALL.
Chang TC, Chen W, Qu C, Cheng Z, Elsayed A, Pounds SB, Shago M, Rabin KR, Raetz EA, Devidas M, Cheng C, Angiolillo A, Baviskar P, Borowitz M, Burke MJ, Carroll A, Carroll WL, Chen IM, Harvey R, Heerema N, Iacobucci I, Wang JR, Jeha S, Larsen E, Mattano L, Maloney K, Pui CH, Ramirez NC, Salzer W, Willman C, Winick N, Wood B, Hunger SP, Wu G, Mullighan CG, Loh ML. Chang TC, et al. Among authors: pounds sb. J Clin Oncol. 2024 Dec 23:JCO2402335. doi: 10.1200/JCO-24-02335. Online ahead of print. J Clin Oncol. 2024. PMID: 39715469 No abstract available.
Long-read epigenomic diagnosis and prognosis of Acute Myeloid Leukemia.
Lamba J, Marchi F, Landwehr M, Schade AK, Shastri V, Ghavami M, Sckaff F, Marrero R, Nguyen N, Mansinghka V, Cao X, Slayton W, Starostik P, Ribeiro R, Rubnitz J, Klco J, Gamis A, Triche T, Ries R, Kolb EA, Aplenc R, Alonzo T, Pounds S, Meshinchi S, Cogle C, Elsayed A. Lamba J, et al. Among authors: pounds s. Res Sq [Preprint]. 2024 Dec 12:rs.3.rs-5450972. doi: 10.21203/rs.3.rs-5450972/v1. Res Sq. 2024. PMID: 39711573 Free PMC article. Preprint.
Heterogeneity of IKZF1 genomic alterations and risk of relapse in childhood B-cell precursor acute lymphoblastic leukemia.
Mullighan C, Wangondu R, Ashcraft E, Chang TC, Roberts K, Brady S, Fan Y, Evans W, Relling M, Crews K, Yang J, Yang W, Pounds S, Wu G, Devidas M, Maloney K, Mattano L Jr, Schore R, Angiolillo A, Larsen E, Salzer W, Burke M, Loh M, Jeha S, Pui CH, Inaba H, Cheng C. Mullighan C, et al. Among authors: pounds s. Res Sq [Preprint]. 2024 Nov 11:rs.3.rs-5292018. doi: 10.21203/rs.3.rs-5292018/v1. Res Sq. 2024. PMID: 39606455 Free PMC article. Preprint.
Comprehensive genomic analysis reveals molecular heterogeneity in pediatric ALK-positive anaplastic large cell lymphoma.
Shaw TI, Pounds S, Cao X, Ma J, Palacios G, Mason J, Perkins S, Wu G, Fan Y, Wang J, Zhou X, Obermayer A, Kinney MC, Kraveka J, Gross T, Sandlund J, Zhang J, Mullighan C, Lim MS, Leventaki V. Shaw TI, et al. Among authors: pounds s. Leukemia. 2024 Nov 26. doi: 10.1038/s41375-024-02468-4. Online ahead of print. Leukemia. 2024. PMID: 39592809
A multiomic atlas identifies a treatment-resistant, bone marrow progenitor-like cell population in T cell acute lymphoblastic leukemia.
Xu J, Chen C, Sussman JH, Yoshimura S, Vincent T, Pölönen P, Hu J, Bandyopadhyay S, Elghawy O, Yu W, Tumulty J, Chen CH, Li EY, Diorio C, Shraim R, Newman H, Uppuluri L, Li A, Chen GM, Wu DW, Ding YY, Xu JA, Karanfilovski D, Lim T, Hsu M, Thadi A, Ahn KJ, Wu CY, Peng J, Sun Y, Wang A, Mehta R, Frank D, Meyer L, Loh ML, Raetz EA, Chen Z, Wood BL, Devidas M, Dunsmore KP, Winter SS, Chang TC, Wu G, Pounds SB, Zhang NR, Carroll W, Hunger SP, Bernt K, Yang JJ, Mullighan CG, Tan K, Teachey DT. Xu J, et al. Among authors: pounds sb. Nat Cancer. 2024 Nov 25. doi: 10.1038/s43018-024-00863-5. Online ahead of print. Nat Cancer. 2024. PMID: 39587259
Comparison of DNA methylation based classification models for precision diagnostics of central nervous system tumors.
Tran QT, Breuer A, Lin T, Tatevossian R, Allen SJ, Clay M, Furtado LV, Chen M, Hedges D, Michael T, Robinson G, Northcott P, Gajjar A, Azzato E, Shurtleff S, Ellison DW, Pounds S, Orr BA. Tran QT, et al. Among authors: pounds s. NPJ Precis Oncol. 2024 Oct 2;8(1):218. doi: 10.1038/s41698-024-00718-3. NPJ Precis Oncol. 2024. PMID: 39358389 Free PMC article.
Impact of Genetic Ancestry on T-cell Acute Lymphoblastic Leukemia Outcomes.
Teachey D, Newman H, Lee S, Pölönen P, Shraim R, Li Y, Liu H, Aplenc R, Bandyopadhyay S, Chen C, Chen Z, Devidas M, Diorio C, Dunsmore K, Elghawy O, Elhachimi A, Fuller T, Gupta S, Hall J, Hughes A, Hunger S, Loh M, Martinez Z, McCoy M, Mullen C, Pounds S, Raetz E, Ryan T, Seffernick A, Shi G, Sussman J, Tan K, Uppuluri L, Vincent TL, Wang'ondu R, Winestone L, Winter S, Wood B, Wu G, Xu J, Yang W, Mullighan C, Yang J, Bona K. Teachey D, et al. Among authors: pounds s. Res Sq [Preprint]. 2024 Aug 16:rs.3.rs-4858231. doi: 10.21203/rs.3.rs-4858231/v1. Res Sq. 2024. PMID: 39184069 Free PMC article. Preprint.
215 results