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Page 1
Resilience of genetic diversity in forest trees over the Quaternary.
Milesi P, Kastally C, Dauphin B, Cervantes S, Bagnoli F, Budde KB, Cavers S, Fady B, Faivre-Rampant P, González-Martínez SC, Grivet D, Gugerli F, Jorge V, Lesur Kupin I, Ojeda DI, Olsson S, Opgenoorth L, Pinosio S, Plomion C, Rellstab C, Rogier O, Scalabrin S, Scotti I, Vendramin GG, Westergren M, Lascoux M, Pyhäjärvi T; GenTree Consortium. Milesi P, et al. Among authors: scalabrin s. Nat Commun. 2024 Oct 14;15(1):8538. doi: 10.1038/s41467-024-52612-y. Nat Commun. 2024. PMID: 39402024 Free PMC article.
New resources for genetic studies in Populus nigra: genome-wide SNP discovery and development of a 12k Infinium array.
Faivre-Rampant P, Zaina G, Jorge V, Giacomello S, Segura V, Scalabrin S, Guérin V, De Paoli E, Aluome C, Viger M, Cattonaro F, Payne A, PaulStephenRaj P, Le Paslier MC, Berard A, Allwright MR, Villar M, Taylor G, Bastien C, Morgante M. Faivre-Rampant P, et al. Among authors: scalabrin s. Mol Ecol Resour. 2016 Jul;16(4):1023-36. doi: 10.1111/1755-0998.12513. Epub 2016 Mar 24. Mol Ecol Resour. 2016. PMID: 26929265 Free article.
A chromosome-scale assembly reveals chromosomal aberrations and exchanges generating genetic diversity in Coffea arabica germplasm.
Scalabrin S, Magris G, Liva M, Vitulo N, Vidotto M, Scaglione D, Del Terra L, Ruosi MR, Navarini L, Pellegrino G, Berny Mier Y Teran JC, Toniutti L, Suggi Liverani F, Cerutti M, Di Gaspero G, Morgante M. Scalabrin S, et al. Nat Commun. 2024 Jan 23;15(1):463. doi: 10.1038/s41467-023-44449-8. Nat Commun. 2024. PMID: 38263403 Free PMC article.
Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.
Wu GA, Prochnik S, Jenkins J, Salse J, Hellsten U, Murat F, Perrier X, Ruiz M, Scalabrin S, Terol J, Takita MA, Labadie K, Poulain J, Couloux A, Jabbari K, Cattonaro F, Del Fabbro C, Pinosio S, Zuccolo A, Chapman J, Grimwood J, Tadeo FR, Estornell LH, Muñoz-Sanz JV, Ibanez V, Herrero-Ortega A, Aleza P, Pérez-Pérez J, Ramón D, Brunel D, Luro F, Chen C, Farmerie WG, Desany B, Kodira C, Mohiuddin M, Harkins T, Fredrikson K, Burns P, Lomsadze A, Borodovsky M, Reforgiato G, Freitas-Astúa J, Quetier F, Navarro L, Roose M, Wincker P, Schmutz J, Morgante M, Machado MA, Talon M, Jaillon O, Ollitrault P, Gmitter F, Rokhsar D. Wu GA, et al. Among authors: scalabrin s. Nat Biotechnol. 2014 Jul;32(7):656-62. doi: 10.1038/nbt.2906. Epub 2014 Jun 8. Nat Biotechnol. 2014. PMID: 24908277 Free PMC article.
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution.
International Peach Genome Initiative; Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F, Zuccolo A, Rossini L, Jenkins J, Vendramin E, Meisel LA, Decroocq V, Sosinski B, Prochnik S, Mitros T, Policriti A, Cipriani G, Dondini L, Ficklin S, Goodstein DM, Xuan P, Del Fabbro C, Aramini V, Copetti D, Gonzalez S, Horner DS, Falchi R, Lucas S, Mica E, Maldonado J, Lazzari B, Bielenberg D, Pirona R, Miculan M, Barakat A, Testolin R, Stella A, Tartarini S, Tonutti P, Arús P, Orellana A, Wells C, Main D, Vizzotto G, Silva H, Salamini F, Schmutz J, Morgante M, Rokhsar DS. International Peach Genome Initiative, et al. Among authors: scalabrin s. Nat Genet. 2013 May;45(5):487-94. doi: 10.1038/ng.2586. Epub 2013 Mar 24. Nat Genet. 2013. PMID: 23525075 Free article.
A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm.
Scalabrin S, Toniutti L, Di Gaspero G, Scaglione D, Magris G, Vidotto M, Pinosio S, Cattonaro F, Magni F, Jurman I, Cerutti M, Suggi Liverani F, Navarini L, Del Terra L, Pellegrino G, Ruosi MR, Vitulo N, Valle G, Pallavicini A, Graziosi G, Klein PE, Bentley N, Murray S, Solano W, Al Hakimi A, Schilling T, Montagnon C, Morgante M, Bertrand B. Scalabrin S, et al. Sci Rep. 2020 Mar 13;10(1):4642. doi: 10.1038/s41598-020-61216-7. Sci Rep. 2020. PMID: 32170172 Free PMC article.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyère C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, Del Fabbro C, Alaux M, Di Gaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, Le Clainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezzotti M, Lecharny A, Scarpelli C, Artiguenave F, Pè ME, Valle G, Morgante M, Caboche M, Adam-Blondon AF, Weissenbach J, Quétier F, Wincker P; French-Italian Public Consortium for Grapevine Genome Characterization. Jaillon O, et al. Among authors: scalabrin s. Nature. 2007 Sep 27;449(7161):463-7. doi: 10.1038/nature06148. Epub 2007 Aug 26. Nature. 2007. PMID: 17721507
Genetic Mapping of the Incompatibility Locus in Olive and Development of a Linked Sequence-Tagged Site Marker.
Mariotti R, Fornasiero A, Mousavi S, Cultrera NGM, Brizioli F, Pandolfi S, Passeri V, Rossi M, Magris G, Scalabrin S, Scaglione D, Di Gaspero G, Saumitou-Laprade P, Vernet P, Alagna F, Morgante M, Baldoni L. Mariotti R, et al. Among authors: scalabrin s. Front Plant Sci. 2020 Jan 28;10:1760. doi: 10.3389/fpls.2019.01760. eCollection 2019. Front Plant Sci. 2020. PMID: 32117338 Free PMC article.
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