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Quantifying constraint in the human mitochondrial genome.
Lake NJ, Ma K, Liu W, Battle SL, Laricchia KM, Tiao G, Puiu D, Ng KK, Cohen J, Compton AG, Cowie S, Christodoulou J, Thorburn DR, Zhao H, Arking DE, Sunyaev SR, Lek M. Lake NJ, et al. Among authors: puiu d. Nature. 2024 Nov;635(8038):390-397. doi: 10.1038/s41586-024-08048-x. Epub 2024 Oct 16. Nature. 2024. PMID: 39415008
Deleterious heteroplasmic mitochondrial mutations are associated with an increased risk of overall and cancer-specific mortality.
Hong YS, Battle SL, Shi W, Puiu D, Pillalamarri V, Xie J, Pankratz N, Lake NJ, Lek M, Rotter JI, Rich SS, Kooperberg C, Reiner AP, Auer PL, Heard-Costa N, Liu C, Lai M, Murabito JM, Levy D, Grove ML, Alonso A, Gibbs R, Dugan-Perez S, Gondek LP, Guallar E, Arking DE. Hong YS, et al. Among authors: puiu d. Nat Commun. 2023 Sep 30;14(1):6113. doi: 10.1038/s41467-023-41785-7. Nat Commun. 2023. PMID: 37777527 Free PMC article.
Mitochondrial heteroplasmy improves risk prediction for myeloid neoplasms.
Hong YS, Pasca S, Shi W, Puiu D, Lake NJ, Lek M, Ru M, Grove ML, Prizment A, Joshu CE, Platz EA, Guallar E, Arking DE, Gondek LP. Hong YS, et al. Among authors: puiu d. Nat Commun. 2024 Nov 22;15(1):10133. doi: 10.1038/s41467-024-54443-3. Nat Commun. 2024. PMID: 39578475 Free PMC article.
Genomic variability in Zika virus in GBS cases in Colombia.
Rivera-Franco N, López-Alvarez D, Castillo A, Aristizabal E, Puiu D, Salzberg SL, Pardo CA, Parra B; NEAS. Rivera-Franco N, et al. Among authors: puiu d. PLoS One. 2024 Nov 19;19(11):e0313545. doi: 10.1371/journal.pone.0313545. eCollection 2024. PLoS One. 2024. PMID: 39561198 Free PMC article.
A genome sequence for the threatened whitebark pine.
Neale DB, Zimin AV, Meltzer A, Bhattarai A, Amee M, Figueroa Corona L, Allen BJ, Puiu D, Wright J, De La Torre AR, McGuire PE, Timp W, Salzberg SL, Wegrzyn JL. Neale DB, et al. Among authors: puiu d. G3 (Bethesda). 2024 May 7;14(5):jkae061. doi: 10.1093/g3journal/jkae061. G3 (Bethesda). 2024. PMID: 38526344 Free PMC article.
A Genome Sequence for the Threatened Whitebark Pine.
Neale DB, Zimin AV, Meltzer A, Bhattarai A, Amee M, Corona LF, Allen BJ, Puiu D, Wright J, Torre AR, McGuire PE, Timp W, Salzberg SL, Wegrzyn JL. Neale DB, et al. Among authors: puiu d. bioRxiv [Preprint]. 2023 Nov 17:2023.11.16.567420. doi: 10.1101/2023.11.16.567420. bioRxiv. 2023. Update in: G3 (Bethesda). 2024 May 7;14(5):jkae061. doi: 10.1093/g3journal/jkae061 PMID: 38014212 Free PMC article. Updated. Preprint.
CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure.
Varabyou A, Sommer MJ, Erdogdu B, Shinder I, Minkin I, Chao KH, Park S, Heinz J, Pockrandt C, Shumate A, Rincon N, Puiu D, Steinegger M, Salzberg SL, Pertea M. Varabyou A, et al. Among authors: puiu d. Genome Biol. 2023 Oct 30;24(1):249. doi: 10.1186/s13059-023-03088-4. Genome Biol. 2023. PMID: 37904256 Free PMC article.
77 results