Ito N - Search Results

1

Structural dynamics of the Ca²⁺-regulated cutinase towards structure-based improvement of PET degradation activity.

Numoto N, Kondo F, Bekker GJ, Liao Z, Yamashita M, Iida A, Ito N, Kamiya N, Oda M. Numoto N, et al. Among authors: ito n. Int J Biol Macromol. 2024 Nov;281(Pt 4):136597. doi: 10.1016/j.ijbiomac.2024.136597. Epub 2024 Oct 15. Int J Biol Macromol. 2024. PMID: 39419144

2

Structural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca²⁺-Driven Catalytic Cycle.

Numoto N, Kamiya N, Bekker GJ, Yamagami Y, Inaba S, Ishii K, Uchiyama S, Kawai F, Ito N, Oda M. Numoto N, et al. Among authors: ito n. Biochemistry. 2018 Sep 11;57(36):5289-5300. doi: 10.1021/acs.biochem.8b00624. Epub 2018 Aug 27. Biochemistry. 2018. PMID: 30110540

3

Multiple structural states of Ca2+-regulated PET hydrolase, Cut190, and its correlation with activity and stability.

Senga A, Numoto N, Yamashita M, Iida A, Ito N, Kawai F, Oda M. Senga A, et al. Among authors: ito n. J Biochem. 2021 Mar 5;169(2):207-213. doi: 10.1093/jb/mvaa102. J Biochem. 2021. PMID: 32882044

4

Structural basis of mutants of PET-degrading enzyme from Saccharomonospora viridis AHK190 with high activity and thermal stability.

Emori M, Numoto N, Senga A, Bekker GJ, Kamiya N, Kobayashi Y, Ito N, Kawai F, Oda M. Emori M, et al. Among authors: ito n. Proteins. 2021 May;89(5):502-511. doi: 10.1002/prot.26034. Epub 2020 Dec 24. Proteins. 2021. PMID: 33340163

5

Elucidation of binding mechanism, affinity, and complex structure between mWT1 tumor-associated antigen peptide and HLA-A*24:02.

Bekker GJ, Numoto N, Kawasaki M, Hayashi T, Yabuno S, Kozono Y, Shimizu T, Kozono H, Ito N, Oda M, Kamiya N. Bekker GJ, et al. Among authors: ito n. Protein Sci. 2023 Oct;32(10):e4775. doi: 10.1002/pro.4775. Protein Sci. 2023. PMID: 37661929 Free PMC article.

6

Crystal Structures and Thermodynamic Analysis Reveal Distinct Mechanisms of CD28 Phosphopeptide Binding to the Src Homology 2 (SH2) Domains of Three Adaptor Proteins.

Inaba S, Numoto N, Ogawa S, Morii H, Ikura T, Abe R, Ito N, Oda M. Inaba S, et al. Among authors: ito n. J Biol Chem. 2017 Jan 20;292(3):1052-1060. doi: 10.1074/jbc.M116.755173. Epub 2016 Dec 6. J Biol Chem. 2017. PMID: 27927989 Free PMC article.

7

Three-dimensional structure of a high affinity anti-(4-hydroxy-3-nitrophenyl)acetyl antibody possessing a glycine residue at position 95 of the heavy chain.

Nishiguchi A, Numoto N, Ito N, Azuma T, Oda M. Nishiguchi A, et al. Among authors: ito n. Mol Immunol. 2019 Oct;114:545-552. doi: 10.1016/j.molimm.2019.09.001. Epub 2019 Sep 11. Mol Immunol. 2019. PMID: 31521018

8

Molecular interactions of the CTLA-4 cytoplasmic region with the phosphoinositide 3-kinase SH2 domains.

Iiyama M, Numoto N, Ogawa S, Kuroda M, Morii H, Abe R, Ito N, Oda M. Iiyama M, et al. Among authors: ito n. Mol Immunol. 2021 Mar;131:51-59. doi: 10.1016/j.molimm.2020.12.002. Epub 2020 Dec 30. Mol Immunol. 2021. PMID: 33386150

9

Affinity-matured antibody with a disulfide bond in H-CDR3 loop.

Yoshida M, Hanazono Y, Numoto N, Nagao S, Yabuno S, Kitagawa Y, Sekiguchi H, Ito N, Azuma T, Oda M. Yoshida M, et al. Among authors: ito n. Arch Biochem Biophys. 2024 Aug;758:110068. doi: 10.1016/j.abb.2024.110068. Epub 2024 Jun 22. Arch Biochem Biophys. 2024. PMID: 38909835

10

Structural basis for the full and partial agonist activities of retinoid X receptor α ligands with an iso-butoxy and an isopropyl group.

Imai D, Numoto N, Tokiwa H, Kakuta H, Ito N. Imai D, et al. Among authors: ito n. Biochem Biophys Res Commun. 2024 Nov 19;734:150617. doi: 10.1016/j.bbrc.2024.150617. Epub 2024 Aug 28. Biochem Biophys Res Commun. 2024. PMID: 39241622

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