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A Proteomics Pipeline for Generating Clinical Grade Biomarker Candidates from Data-Independent Acquisition Mass Spectrometry (DIA-MS) Discovery.
Fu Q, Vegesna M, Sundararaman N, Damoc E, Arrey TN, Pashkova A, Mengesha E, Debbas P, Joung S, Li D, Cheng S, Braun J, McGovern DPB, Murray CI, Xuan Y, Van Eyk JE. Fu Q, et al. Among authors: braun j. Angew Chem Int Ed Engl. 2024 Dec 20;63(52):e202409446. doi: 10.1002/anie.202409446. Epub 2024 Nov 11. Angew Chem Int Ed Engl. 2024. PMID: 39432331
Paradigm shift in biomarker translation: a pipeline to generate clinical grade biomarker candidates from DIA-MS discovery.
Fu Q, Vegesna M, Sundararaman N, Damoc E, Arrey TN, Pashkova A, Mengesha E, Debbas P, Joung S, Li D, Cheng S, Braun J, McGovern DPB, Murray C, Xuan Y, Eyk JEV. Fu Q, et al. Among authors: braun j. bioRxiv [Preprint]. 2024 Mar 22:2024.03.20.586018. doi: 10.1101/2024.03.20.586018. bioRxiv. 2024. Update in: Angew Chem Int Ed Engl. 2024 Dec 20;63(52):e202409446. doi: 10.1002/anie.202409446 PMID: 38562888 Free PMC article. Updated. Preprint.
The T-cell clonal response to SARS-CoV-2 vaccination in inflammatory bowel disease patients is augmented by anti-TNF therapy and often deficient in antibody-responders.
Li D, Xu A, Mengesha E, Elyanow R, Gittelman RM, Chapman H, Prostko JC, Frias EC, Stewart JL, Pozdnyakova V, Debbas P, Mujukian A, Horizon AA, Merin N, Joung S, Botwin GJ, Sobhani K, Figueiredo JC, Cheng S, Kaplan IM, McGovern DPB, Merchant A, Melmed GY, Braun J. Li D, et al. Among authors: braun j. medRxiv [Preprint]. 2021 Dec 8:2021.12.08.21267444. doi: 10.1101/2021.12.08.21267444. medRxiv. 2021. Update in: Inflamm Bowel Dis. 2022 Jul 1;28(7):1130-1133. doi: 10.1093/ibd/izac071 PMID: 34909785 Free article. Updated. Preprint.
Age-related patterns of microbial dysbiosis in multiplex inflammatory bowel disease families.
Jacobs JP, Spencer EA, Helmus DS, Yang JC, Lagishetty V, Bongers G, Britton G, Gettler K, Reyes-Mercedes P, Hu J, Hart A, Lamousé-Smith E, Wehkamp J, Landers C, Debbas P, Torres J, Colombel JF, Cho J, Peter I, Faith J, Braun J, Dubinsky M. Jacobs JP, et al. Among authors: braun j. Gut. 2024 Nov 11;73(12):1953-1964. doi: 10.1136/gutjnl-2024-332475. Gut. 2024. PMID: 39122361
Inflammatory bowel disease.
Sachar DB, Jewell D, Gasche C, Braun J. Sachar DB, et al. Among authors: braun j. Int J Inflam. 2012;2012:341052. doi: 10.1155/2012/341052. Epub 2012 Mar 27. Int J Inflam. 2012. PMID: 22536542 Free PMC article. No abstract available.
Inflammatory disease microbiomes share a functional pathogenicity predicted by C-reactive protein.
Britton GJ, Mogno I, Chen-Liaw A, Plitt T, Helmus D, Bongers G, Brough I, Colmenero P, Lam LH, Bullers SJ, Penkava F, Reyes-Mercedes P, Braun J, Jacobs J, Desch AN, Gevers D, Simmons S, Filer A, Taylor PC, Bowness P, Huttenhower C, Littman DR, Dubinsky MC, Raza K, Tankou SK, Faith JJ. Britton GJ, et al. Among authors: braun j. bioRxiv [Preprint]. 2025 Jan 18:2025.01.14.633015. doi: 10.1101/2025.01.14.633015. bioRxiv. 2025. PMID: 39868147 Free PMC article. Preprint.
Global metabolomic alterations associated with endocrine-disrupting chemicals among pregnant individuals and newborns.
Puvvula J, Song LC, Zalewska KJ, Alexander A, Manz KE, Braun JM, Pennell KD, DeFranco EA, Ho SM, Leung YK, Huang S, Vuong AM, Kim SS, Percy Z, Bhashyam P, Lee R, Jones DP, Tran V, Kim DV, Calafat AM, Botelho JC, Chen A. Puvvula J, et al. Among authors: braun jm. Metabolomics. 2025 Jan 25;21(1):20. doi: 10.1007/s11306-024-02219-7. Metabolomics. 2025. PMID: 39863779 Free PMC article.
3,573 results