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Finding Long-COVID: temporal topic modeling of electronic health records from the N3C and RECOVER programs.
O'Neil ST, Madlock-Brown C, Wilkins KJ, McGrath BM, Davis HE, Assaf GS, Wei H, Zareie P, French ET, Loomba J, McMurry JA, Zhou A, Chute CG, Moffitt RA, Pfaff ER, Yoo YJ, Leese P, Chew RF, Lieberman M, Haendel MA; N3C and RECOVER Consortia. O'Neil ST, et al. Among authors: haendel ma. NPJ Digit Med. 2024 Oct 21;7(1):296. doi: 10.1038/s41746-024-01286-3. NPJ Digit Med. 2024. PMID: 39433942 Free PMC article.
Finding Long-COVID: Temporal Topic Modeling of Electronic Health Records from the N3C and RECOVER Programs.
O'Neil ST, Madlock-Brown C, Wilkins KJ, McGrath BM, Davis HE, Assaf GS, Wei H, Zareie P, French ET, Loomba J, McMurry JA, Zhou A, Chute CG, Moffitt RA, Pfaff ER, Yoo YJ, Leese P, Chew RF, Lieberman M, Haendel MA. O'Neil ST, et al. Among authors: haendel ma. medRxiv [Preprint]. 2024 Jun 11:2023.09.11.23295259. doi: 10.1101/2023.09.11.23295259. medRxiv. 2024. Update in: NPJ Digit Med. 2024 Oct 21;7(1):296. doi: 10.1038/s41746-024-01286-3 PMID: 38947087 Free PMC article. Updated. Preprint.
Semantic integration of clinical laboratory tests from electronic health records for deep phenotyping and biomarker discovery.
Zhang XA, Yates A, Vasilevsky N, Gourdine JP, Callahan TJ, Carmody LC, Danis D, Joachimiak MP, Ravanmehr V, Pfaff ER, Champion J, Robasky K, Xu H, Fecho K, Walton NA, Zhu RL, Ramsdill J, Mungall CJ, Köhler S, Haendel MA, McDonald CJ, Vreeman DJ, Peden DB, Bennett TD, Feinstein JA, Martin B, Stefanski AL, Hunter LE, Chute CG, Robinson PN. Zhang XA, et al. Among authors: haendel ma. NPJ Digit Med. 2019;2:32. doi: 10.1038/s41746-019-0110-4. Epub 2019 May 2. NPJ Digit Med. 2019. PMID: 31119199 Free PMC article.
Challenges in defining Long COVID: Striking differences across literature, Electronic Health Records, and patient-reported information.
Rando HM, Bennett TD, Byrd JB, Bramante C, Callahan TJ, Chute CG, Davis HE, Deer R, Gagnier J, Koraishy FM, Liu F, McMurry JA, Moffitt RA, Pfaff ER, Reese JT, Relevo R, Robinson PN, Saltz JH, Solomonides A, Sule A, Topaloglu U, Haendel MA. Rando HM, et al. Among authors: haendel ma. medRxiv [Preprint]. 2021 Mar 26:2021.03.20.21253896. doi: 10.1101/2021.03.20.21253896. medRxiv. 2021. PMID: 33791733 Free PMC article. Preprint.
Identifying who has long COVID in the USA: a machine learning approach using N3C data.
Pfaff ER, Girvin AT, Bennett TD, Bhatia A, Brooks IM, Deer RR, Dekermanjian JP, Jolley SE, Kahn MG, Kostka K, McMurry JA, Moffitt R, Walden A, Chute CG, Haendel MA; N3C Consortium. Pfaff ER, et al. Among authors: haendel ma. Lancet Digit Health. 2022 Jul;4(7):e532-e541. doi: 10.1016/S2589-7500(22)00048-6. Epub 2022 May 16. Lancet Digit Health. 2022. PMID: 35589549 Free PMC article.
Long COVID risk and pre-COVID vaccination in an EHR-based cohort study from the RECOVER program.
Brannock MD, Chew RF, Preiss AJ, Hadley EC, Redfield S, McMurry JA, Leese PJ, Girvin AT, Crosskey M, Zhou AG, Moffitt RA, Funk MJ, Pfaff ER, Haendel MA, Chute CG; N3C; RECOVER Consortia. Brannock MD, et al. Among authors: haendel ma. Nat Commun. 2023 May 22;14(1):2914. doi: 10.1038/s41467-023-38388-7. Nat Commun. 2023. PMID: 37217471 Free PMC article.
De-black-boxing health AI: demonstrating reproducible machine learning computable phenotypes using the N3C-RECOVER Long COVID model in the All of Us data repository.
Pfaff ER, Girvin AT, Crosskey M, Gangireddy S, Master H, Wei WQ, Kerchberger VE, Weiner M, Harris PA, Basford M, Lunt C, Chute CG, Moffitt RA, Haendel M; N3C and RECOVER Consortia. Pfaff ER, et al. J Am Med Inform Assoc. 2023 Jun 20;30(7):1305-1312. doi: 10.1093/jamia/ocad077. J Am Med Inform Assoc. 2023. PMID: 37218289 Free PMC article.
204 results