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Overloading And unpacKing (OAK) - droplet-based combinatorial indexing for ultra-high throughput single-cell multiomic profiling.
Wu B, Bennett HM, Ye X, Sridhar A, Eidenschenk C, Everett C, Nazarova EV, Chen HH, Kim IK, Deangelis M, Owen LA, Chen C, Lau J, Shi M, Lund JM, Xavier-Magalhães A, Patel N, Liang Y, Modrusan Z, Darmanis S. Wu B, et al. Among authors: bennett hm. Nat Commun. 2024 Oct 23;15(1):9146. doi: 10.1038/s41467-024-53227-z. Nat Commun. 2024. PMID: 39443484 Free PMC article.
Defining the early stages of intestinal colonisation by whipworms.
Duque-Correa MA, Goulding D, Rodgers FH, Gillis JA, Cormie C, Rawlinson KA, Bancroft AJ, Bennett HM, Lotkowska ME, Reid AJ, Speak AO, Scott P, Redshaw N, Tolley C, McCarthy C, Brandt C, Sharpe C, Ridley C, Moya JG, Carneiro CM, Starborg T, Hayes KS, Holroyd N, Sanders M, Thornton DJ, Grencis RK, Berriman M. Duque-Correa MA, et al. Among authors: bennett hm. Nat Commun. 2022 Apr 1;13(1):1725. doi: 10.1038/s41467-022-29334-0. Nat Commun. 2022. PMID: 35365634 Free PMC article.
The genomes of four tapeworm species reveal adaptations to parasitism.
Tsai IJ, Zarowiecki M, Holroyd N, Garciarrubio A, Sánchez-Flores A, Brooks KL, Tracey A, Bobes RJ, Fragoso G, Sciutto E, Aslett M, Beasley H, Bennett HM, Cai X, Camicia F, Clark R, Cucher M, De Silva N, Day TA, Deplazes P, Estrada K, Fernández C, Holland PWH, Hou J, Hu S, Huckvale T, Hung SS, Kamenetzky L, Keane JA, Kiss F, Koziol U, Lambert O, Liu K, Luo X, Luo Y, Macchiaroli N, Nichol S, Paps J, Parkinson J, Pouchkina-Stantcheva N, Riddiford N, Rosenzvit M, Salinas G, Wasmuth JD, Zamanian M, Zheng Y; Taenia solium Genome Consortium; Cai J, Soberón X, Olson PD, Laclette JP, Brehm K, Berriman M. Tsai IJ, et al. Among authors: bennett hm. Nature. 2013 Apr 4;496(7443):57-63. doi: 10.1038/nature12031. Epub 2013 Mar 13. Nature. 2013. PMID: 23485966 Free PMC article.
The genomic basis of parasitism in the Strongyloides clade of nematodes.
Hunt VL, Tsai IJ, Coghlan A, Reid AJ, Holroyd N, Foth BJ, Tracey A, Cotton JA, Stanley EJ, Beasley H, Bennett HM, Brooks K, Harsha B, Kajitani R, Kulkarni A, Harbecke D, Nagayasu E, Nichol S, Ogura Y, Quail MA, Randle N, Xia D, Brattig NW, Soblik H, Ribeiro DM, Sanchez-Flores A, Hayashi T, Itoh T, Denver DR, Grant W, Stoltzfus JD, Lok JB, Murayama H, Wastling J, Streit A, Kikuchi T, Viney M, Berriman M. Hunt VL, et al. Among authors: bennett hm. Nat Genet. 2016 Mar;48(3):299-307. doi: 10.1038/ng.3495. Epub 2016 Feb 1. Nat Genet. 2016. PMID: 26829753 Free PMC article.
A comprehensive analysis framework for evaluating commercial single-cell RNA sequencing technologies.
De Simone M, Hoover J, Lau J, Bennett HM, Wu B, Chen C, Menon H, Au-Yeung A, Lear S, Vaidya S, Shi M, Lund JM, Xavier-Magalhães A, Liang Y, Kurdoglu A, O'Gorman WE, Modrusan Z, Le D, Darmanis S. De Simone M, et al. Among authors: bennett hm. Nucleic Acids Res. 2024 Dec 16:gkae1186. doi: 10.1093/nar/gkae1186. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39675380
56 results