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HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors.
Vorontsov IE, Eliseeva IA, Zinkevich A, Nikonov M, Abramov S, Boytsov A, Kamenets V, Kasianova A, Kolmykov S, Yevshin IS, Favorov A, Medvedeva YA, Jolma A, Kolpakov F, Makeev VJ, Kulakovskiy IV. Vorontsov IE, et al. Among authors: yevshin is. Nucleic Acids Res. 2024 Jan 5;52(D1):D154-D163. doi: 10.1093/nar/gkad1077. Nucleic Acids Res. 2024. PMID: 37971293 Free PMC article.
Population size estimation for quality control of ChIP-Seq datasets.
Kolmykov SK, Kondrakhin YV, Yevshin IS, Sharipov RN, Ryabova AS, Kolpakov FA. Kolmykov SK, et al. Among authors: yevshin is. PLoS One. 2019 Aug 29;14(8):e0221760. doi: 10.1371/journal.pone.0221760. eCollection 2019. PLoS One. 2019. PMID: 31465497 Free PMC article.
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.
Kulakovskiy IV, Vorontsov IE, Yevshin IS, Sharipov RN, Fedorova AD, Rumynskiy EI, Medvedeva YA, Magana-Mora A, Bajic VB, Papatsenko DA, Kolpakov FA, Makeev VJ. Kulakovskiy IV, et al. Among authors: yevshin is. Nucleic Acids Res. 2018 Jan 4;46(D1):D252-D259. doi: 10.1093/nar/gkx1106. Nucleic Acids Res. 2018. PMID: 29140464 Free PMC article.