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Epigenetic and 3D genome reprogramming during the aging of human hippocampus.
Zemke NR, Lee S, Mamde S, Yang B, Berchtold N, Maximiliano Garduño B, Indralingam HS, Bartosik WM, Lau PK, Dong K, Yang A, Tani Y, Chen C, Zeng Q, Ajith V, Tong L, Seng C, Li D, Wang T, Xu X, Ren B. Zemke NR, et al. Among authors: mamde s. bioRxiv [Preprint]. 2024 Oct 17:2024.10.14.618338. doi: 10.1101/2024.10.14.618338. bioRxiv. 2024. PMID: 39463924 Free PMC article. Preprint.
Single-cell analysis of chromatin accessibility in the adult mouse brain.
Zu S, Li YE, Wang K, Armand EJ, Mamde S, Amaral ML, Wang Y, Chu A, Xie Y, Miller M, Xu J, Wang Z, Zhang K, Jia B, Hou X, Lin L, Yang Q, Lee S, Li B, Kuan S, Liu H, Zhou J, Pinto-Duarte A, Lucero J, Osteen J, Nunn M, Smith KA, Tasic B, Yao Z, Zeng H, Wang Z, Shang J, Behrens MM, Ecker JR, Wang A, Preissl S, Ren B. Zu S, et al. Among authors: mamde s. Nature. 2023 Dec;624(7991):378-389. doi: 10.1038/s41586-023-06824-9. Epub 2023 Dec 13. Nature. 2023. PMID: 38092917 Free PMC article.
Human microglia show unique transcriptional changes in Alzheimer's disease.
Prater KE, Green KJ, Mamde S, Sun W, Cochoit A, Smith CL, Chiou KL, Heath L, Rose SE, Wiley J, Keene CD, Kwon RY, Snyder-Mackler N, Blue EE, Logsdon B, Young JE, Shojaie A, Garden GA, Jayadev S. Prater KE, et al. Among authors: mamde s. Nat Aging. 2023 Jul;3(7):894-907. doi: 10.1038/s43587-023-00424-y. Epub 2023 May 29. Nat Aging. 2023. PMID: 37248328 Free PMC article.
Hijacking of transcriptional condensates by endogenous retroviruses.
Asimi V, Sampath Kumar A, Niskanen H, Riemenschneider C, Hetzel S, Naderi J, Fasching N, Popitsch N, Du M, Kretzmer H, Smith ZD, Weigert R, Walther M, Mamde S, Meierhofer D, Wittler L, Buschow R, Timmermann B, Cisse II, Ameres SL, Meissner A, Hnisz D. Asimi V, et al. Among authors: mamde s. Nat Genet. 2022 Aug;54(8):1238-1247. doi: 10.1038/s41588-022-01132-w. Epub 2022 Jul 21. Nat Genet. 2022. PMID: 35864192 Free PMC article.