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Rapid MinION profiling of preterm microbiota and antimicrobial-resistant pathogens.
Leggett RM, Alcon-Giner C, Heavens D, Caim S, Brook TC, Kujawska M, Martin S, Peel N, Acford-Palmer H, Hoyles L, Clarke P, Hall LJ, Clark MD. Leggett RM, et al. Among authors: clark md. Nat Microbiol. 2020 Mar;5(3):430-442. doi: 10.1038/s41564-019-0626-z. Epub 2019 Dec 16. Nat Microbiol. 2020. PMID: 31844297 Free PMC article.
Multiple wheat genomes reveal global variation in modern breeding.
Walkowiak S, Gao L, Monat C, Haberer G, Kassa MT, Brinton J, Ramirez-Gonzalez RH, Kolodziej MC, Delorean E, Thambugala D, Klymiuk V, Byrns B, Gundlach H, Bandi V, Siri JN, Nilsen K, Aquino C, Himmelbach A, Copetti D, Ban T, Venturini L, Bevan M, Clavijo B, Koo DH, Ens J, Wiebe K, N'Diaye A, Fritz AK, Gutwin C, Fiebig A, Fosker C, Fu BX, Accinelli GG, Gardner KA, Fradgley N, Gutierrez-Gonzalez J, Halstead-Nussloch G, Hatakeyama M, Koh CS, Deek J, Costamagna AC, Fobert P, Heavens D, Kanamori H, Kawaura K, Kobayashi F, Krasileva K, Kuo T, McKenzie N, Murata K, Nabeka Y, Paape T, Padmarasu S, Percival-Alwyn L, Kagale S, Scholz U, Sese J, Juliana P, Singh R, Shimizu-Inatsugi R, Swarbreck D, Cockram J, Budak H, Tameshige T, Tanaka T, Tsuji H, Wright J, Wu J, Steuernagel B, Small I, Cloutier S, Keeble-Gagnère G, Muehlbauer G, Tibbets J, Nasuda S, Melonek J, Hucl PJ, Sharpe AG, Clark M, Legg E, Bharti A, Langridge P, Hall A, Uauy C, Mascher M, Krattinger SG, Handa H, Shimizu KK, Distelfeld A, Chalmers K, Keller B, Mayer KFX, Poland J, Stein N, McCartney CA, Spannagl M, Wicker T, Pozniak CJ. Walkowiak S, et al. Nature. 2020 Dec;588(7837):277-283. doi: 10.1038/s41586-020-2961-x. Epub 2020 Nov 25. Nature. 2020. PMID: 33239791 Free PMC article.
New approaches for metagenome assembly with short reads.
Ayling M, Clark MD, Leggett RM. Ayling M, et al. Among authors: clark md. Brief Bioinform. 2020 Mar 23;21(2):584-594. doi: 10.1093/bib/bbz020. Brief Bioinform. 2020. PMID: 30815668 Free PMC article. Review.
The ash dieback invasion of Europe was founded by two genetically divergent individuals.
McMullan M, Rafiqi M, Kaithakottil G, Clavijo BJ, Bilham L, Orton E, Percival-Alwyn L, Ward BJ, Edwards A, Saunders DGO, Garcia Accinelli G, Wright J, Verweij W, Koutsovoulos G, Yoshida K, Hosoya T, Williamson L, Jennings P, Ioos R, Husson C, Hietala AM, Vivian-Smith A, Solheim H, MaClean D, Fosker C, Hall N, Brown JKM, Swarbreck D, Blaxter M, Downie JA, Clark MD. McMullan M, et al. Among authors: clark md. Nat Ecol Evol. 2018 Jun;2(6):1000-1008. doi: 10.1038/s41559-018-0548-9. Epub 2018 Apr 23. Nat Ecol Evol. 2018. PMID: 29686237 Free PMC article.
A critical comparison of technologies for a plant genome sequencing project.
Paajanen P, Kettleborough G, López-Girona E, Giolai M, Heavens D, Baker D, Lister A, Cugliandolo F, Wilde G, Hein I, Macaulay I, Bryan GJ, Clark MD. Paajanen P, et al. Among authors: clark md. Gigascience. 2019 Mar 1;8(3):giy163. doi: 10.1093/gigascience/giy163. Gigascience. 2019. PMID: 30624602 Free PMC article.
A low-cost pipeline for soil microbiome profiling.
Bollmann-Giolai A, Giolai M, Heavens D, Macaulay I, Malone J, Clark MD. Bollmann-Giolai A, et al. Among authors: clark md. Microbiologyopen. 2020 Dec;9(12):e1133. doi: 10.1002/mbo3.1133. Epub 2020 Nov 22. Microbiologyopen. 2020. PMID: 33225533 Free PMC article.
195 results