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Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data.
Guccione C, Patel L, Tomofuji Y, McDonald D, Gonzalez A, Sepich-Poore GD, Sonehara K, Zakeri M, Chen Y, Dilmore AH, Damle N, Baranzini SE, Nakatsuji T, Gallo RL, Langmead B, Okada Y, Curtius K, Knight R. Guccione C, et al. Among authors: baranzini se. Res Sq [Preprint]. 2024 Oct 23:rs.3.rs-4721159. doi: 10.21203/rs.3.rs-4721159/v1. Res Sq. 2024. PMID: 39502785 Free PMC article. Preprint.
Multiple Sclerosis-Associated Changes in the Composition and Immune Functions of Spore-Forming Bacteria.
Cekanaviciute E, Pröbstel AK, Thomann A, Runia TF, Casaccia P, Katz Sand I, Crabtree E, Singh S, Morrissey J, Barba P, Gomez R, Knight R, Mazmanian S, Graves J, Cree BAC, Zamvil SS, Baranzini SE. Cekanaviciute E, et al. Among authors: baranzini se. mSystems. 2018 Nov 6;3(6):e00083-18. doi: 10.1128/mSystems.00083-18. eCollection 2018 Nov-Dec. mSystems. 2018. PMID: 30417113 Free PMC article.
Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models.
Cekanaviciute E, Yoo BB, Runia TF, Debelius JW, Singh S, Nelson CA, Kanner R, Bencosme Y, Lee YK, Hauser SL, Crabtree-Hartman E, Sand IK, Gacias M, Zhu Y, Casaccia P, Cree BAC, Knight R, Mazmanian SK, Baranzini SE. Cekanaviciute E, et al. Among authors: baranzini se. Proc Natl Acad Sci U S A. 2017 Oct 3;114(40):10713-10718. doi: 10.1073/pnas.1711235114. Epub 2017 Sep 11. Proc Natl Acad Sci U S A. 2017. PMID: 28893978 Free PMC article.
Restoring the Multiple Sclerosis Associated Imbalance of Gut Indole Metabolites Promotes Remyelination and Suppresses Neuroinflammation.
Jank L, Singh SS, Lee J, Dhukhwa A, Siavoshi F, Joshi D, Minney V, Gupta K, Ghimire S, Deme P, Schoeps VA, Soman K, Ladakis D, Smith M, Borkowski K, Newman J, Baranzini SE, Waubant EL, Fitzgerald KC, Mangalam A, Haughey N, Kornberg M, Chamling X, Calabresi PA, Bhargava P. Jank L, et al. Among authors: baranzini se. bioRxiv [Preprint]. 2024 Oct 28:2024.10.27.620437. doi: 10.1101/2024.10.27.620437. bioRxiv. 2024. PMID: 39554063 Free PMC article. Preprint.
Disease-modifying therapies alter gut microbial composition in MS.
Katz Sand I, Zhu Y, Ntranos A, Clemente JC, Cekanaviciute E, Brandstadter R, Crabtree-Hartman E, Singh S, Bencosme Y, Debelius J, Knight R, Cree BAC, Baranzini SE, Casaccia P. Katz Sand I, et al. Among authors: baranzini se. Neurol Neuroimmunol Neuroinflamm. 2018 Oct 26;6(1):e517. doi: 10.1212/NXI.0000000000000517. eCollection 2019 Jan. Neurol Neuroimmunol Neuroinflamm. 2018. PMID: 30568995 Free PMC article.
Artificial intelligence in food and nutrition evidence: The challenges and opportunities.
Bailey RL, MacFarlane AJ, Field MS, Tagkopoulos I, Baranzini SE, Edwards KM, Rose CJ, Schork NJ, Singhal A, Wallace BC, Fisher KP, Markakis K, Stover PJ. Bailey RL, et al. Among authors: baranzini se. PNAS Nexus. 2024 Oct 15;3(12):pgae461. doi: 10.1093/pnasnexus/pgae461. eCollection 2024 Dec. PNAS Nexus. 2024. PMID: 39677367 Free PMC article.
Biomedical knowledge graph-optimized prompt generation for large language models.
Soman K, Rose PW, Morris JH, Akbas RE, Smith B, Peetoom B, Villouta-Reyes C, Cerono G, Shi Y, Rizk-Jackson A, Israni S, Nelson CA, Huang S, Baranzini SE. Soman K, et al. Among authors: baranzini se. Bioinformatics. 2024 Sep 2;40(9):btae560. doi: 10.1093/bioinformatics/btae560. Bioinformatics. 2024. PMID: 39288310 Free PMC article.
Transcobalamin receptor antibodies in autoimmune vitamin B12 central deficiency.
Pluvinage JV, Ngo T, Fouassier C, McDonagh M, Holmes BB, Bartley CM, Kondapavulur S, Hurabielle C, Bodansky A, Pai V, Hinman S, Aslanpour A, Alvarenga BD, Zorn KC, Zamecnik C, McCann A, Asencor AI, Huynh T, Browne W, Tubati A, Haney MS, Douglas VC, Louine M, Cree BAC, Hauser SL, Seeley W, Baranzini SE, Wells JA, Spudich S, Farhadian S, Ramachandran PS, Gillum L, Hales CM, Zikherman J, Anderson MS, Yazdany J, Smith B, Nath A, Suh G, Flanagan EP, Green AJ, Green R, Gelfand JM, DeRisi JL, Pleasure SJ, Wilson MR. Pluvinage JV, et al. Among authors: baranzini se. Sci Transl Med. 2024 Jun 26;16(753):eadl3758. doi: 10.1126/scitranslmed.adl3758. Epub 2024 Jun 26. Sci Transl Med. 2024. PMID: 38924428 Free PMC article.
179 results