Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Additional filters

Article Language

Species

Sex

Age

Other

Search Results

98 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Publication Date timeline is not available.
Page 1
Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data.
Guccione C, Patel L, Tomofuji Y, McDonald D, Gonzalez A, Sepich-Poore GD, Sonehara K, Zakeri M, Chen Y, Dilmore AH, Damle N, Baranzini SE, Nakatsuji T, Gallo RL, Langmead B, Okada Y, Curtius K, Knight R. Guccione C, et al. Among authors: langmead b. Res Sq [Preprint]. 2024 Oct 23:rs.3.rs-4721159. doi: 10.21203/rs.3.rs-4721159/v1. Res Sq. 2024. PMID: 39502785 Free PMC article. Preprint.
Efficient taxa identification using a pangenome index.
Ahmed O, Rossi M, Boucher C, Langmead B. Ahmed O, et al. Among authors: langmead b. Genome Res. 2023 Jul;33(7):1069-1077. doi: 10.1101/gr.277642.123. Epub 2023 May 31. Genome Res. 2023. PMID: 37258301 Free PMC article.
Cell-specific regulation of gene expression using splicing-dependent frameshifting.
Ling JP, Bygrave AM, Santiago CP, Carmen-Orozco RP, Trinh VT, Yu M, Li Y, Liu Y, Bowden KD, Duncan LH, Han J, Taneja K, Dongmo R, Babola TA, Parker P, Jiang L, Leavey PJ, Smith JJ, Vistein R, Gimmen MY, Dubner B, Helmenstine E, Teodorescu P, Karantanos T, Ghiaur G, Kanold PO, Bergles D, Langmead B, Sun S, Nielsen KJ, Peachey N, Singh MS, Dalton WB, Rajaii F, Huganir RL, Blackshaw S. Ling JP, et al. Among authors: langmead b. Nat Commun. 2022 Oct 1;13(1):5773. doi: 10.1038/s41467-022-33523-2. Nat Commun. 2022. PMID: 36182931 Free PMC article.
Author Correction: Metagenome analysis using the Kraken software suite.
Lu J, Rincon N, Wood DE, Breitwieser FP, Pockrandt C, Langmead B, Salzberg SL, Steinegger M. Lu J, et al. Among authors: langmead b. Nat Protoc. 2024 Aug 29. doi: 10.1038/s41596-024-01064-1. Online ahead of print. Nat Protoc. 2024. PMID: 39210095 No abstract available.
Pangenomic Genotyping with the Marker Array.
Mun T, Vaddadi NSK, Langmead B. Mun T, et al. Among authors: langmead b. Algorithms Bioinform. 2022 Sep;242:19. Algorithms Bioinform. 2022. PMID: 36409181 Free PMC article.
Somatic mosaicism reveals clonal distributions of neocortical development.
Breuss MW, Yang X, Schlachetzki JCM, Antaki D, Lana AJ, Xu X, Chung C, Chai G, Stanley V, Song Q, Newmeyer TF, Nguyen A, O'Brien S, Hoeksema MA, Cao B, Nott A, McEvoy-Venneri J, Pasillas MP, Barton ST, Copeland BR, Nahas S, Van Der Kraan L, Ding Y; NIMH Brain Somatic Mosaicism Network; Glass CK, Gleeson JG. Breuss MW, et al. Nature. 2022 Apr;604(7907):689-696. doi: 10.1038/s41586-022-04602-7. Epub 2022 Apr 20. Nature. 2022. PMID: 35444276 Free PMC article.
A scalable and unbiased discordance metric with H.
Dyjack N, Baker DN, Braverman V, Langmead B, Hicks SC. Dyjack N, et al. Among authors: langmead b. Biostatistics. 2023 Dec 15;25(1):188-202. doi: 10.1093/biostatistics/kxac035. Biostatistics. 2023. PMID: 36063544 Free PMC article.
Efficient encoding of large antigenic spaces by epitope prioritization with Dolphyn.
Liebhoff AM, Venkataraman T, Morgenlander WR, Na M, Kula T, Waugh K, Morrison C, Rewers M, Longman R, Round J, Elledge S, Ruczinski I, Langmead B, Larman HB. Liebhoff AM, et al. Among authors: langmead b. bioRxiv [Preprint]. 2023 Jul 31:2023.07.30.551179. doi: 10.1101/2023.07.30.551179. bioRxiv. 2023. Update in: Nat Commun. 2024 Feb 21;15(1):1577. doi: 10.1038/s41467-024-45601-8 PMID: 37577562 Free PMC article. Updated. Preprint.
98 results