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Page 1
Author Correction: Community assessment of methods to deconvolve cellular composition from bulk gene expression.
White BS, de Reyniès A, Newman AM, Waterfall JJ, Lamb A, Petitprez F, Lin Y, Yu R, Guerrero-Gimenez ME, Domanskyi S, Monaco G, Chung V, Banerjee J, Derrick D, Valdeolivas A, Li H, Xiao X, Wang S, Zheng F, Yang W, Catania CA, Lang BJ, Bertus TJ, Piermarocchi C, Caruso FP, Ceccarelli M, Yu T, Guo X, Bletz J, Coller J, Maecker H, Duault C, Shokoohi V, Patel S, Liliental JE, Simon S; Tumor Deconvolution DREAM Challenge consortium; Saez-Rodriguez J, Heiser LM, Guinney J, Gentles AJ. White BS, et al. Among authors: banerjee j. Nat Commun. 2024 Nov 12;15(1):9783. doi: 10.1038/s41467-024-53843-9. Nat Commun. 2024. PMID: 39532851 Free PMC article. No abstract available.
Community assessment of methods to deconvolve cellular composition from bulk gene expression.
White BS, de Reyniès A, Newman AM, Waterfall JJ, Lamb A, Petitprez F, Lin Y, Yu R, Guerrero-Gimenez ME, Domanskyi S, Monaco G, Chung V, Banerjee J, Derrick D, Valdeolivas A, Li H, Xiao X, Wang S, Zheng F, Yang W, Catania CA, Lang BJ, Bertus TJ, Piermarocchi C, Caruso FP, Ceccarelli M, Yu T, Guo X, Bletz J, Coller J, Maecker H, Duault C, Shokoohi V, Patel S, Liliental JE, Simon S; Tumor Deconvolution DREAM Challenge consortium; Saez-Rodriguez J, Heiser LM, Guinney J, Gentles AJ. White BS, et al. Among authors: banerjee j. Nat Commun. 2024 Aug 27;15(1):7362. doi: 10.1038/s41467-024-50618-0. Nat Commun. 2024. PMID: 39191725 Free PMC article.
Machine learning in rare disease.
Banerjee J, Taroni JN, Allaway RJ, Prasad DV, Guinney J, Greene C. Banerjee J, et al. Nat Methods. 2023 Jun;20(6):803-814. doi: 10.1038/s41592-023-01886-z. Epub 2023 May 29. Nat Methods. 2023. PMID: 37248386 Review.
Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes.
Reese JT, Blau H, Casiraghi E, Bergquist T, Loomba JJ, Callahan TJ, Laraway B, Antonescu C, Coleman B, Gargano M, Wilkins KJ, Cappelletti L, Fontana T, Ammar N, Antony B, Murali TM, Caufield JH, Karlebach G, McMurry JA, Williams A, Moffitt R, Banerjee J, Solomonides AE, Davis H, Kostka K, Valentini G, Sahner D, Chute CG, Madlock-Brown C, Haendel MA, Robinson PN; N3C Consortium; RECOVER Consortium. Reese JT, et al. Among authors: banerjee j. EBioMedicine. 2023 Jan;87:104413. doi: 10.1016/j.ebiom.2022.104413. Epub 2022 Dec 21. EBioMedicine. 2023. PMID: 36563487 Free PMC article.
Multidimensional Immunotyping of Human NF1-Associated Peripheral Nerve Sheath Tumors Uncovers Tumor-Associated Macrophages as Key Drivers of Immune Evasion in the Tumor Microenvironment.
Zhang L, Maalouf A, Makri SC, Banerjee J, Suru A, Tam AJ, Calizo A, Pollard K, Wang J, Danilova L, Ioannou M, Levin AS, Morris CD, Rhee DS, Belzberg AJ, Blakeley JO, Ladle BH, Pardoll DM, Lucas CG, Rodriguez FJ, Gross JM, Anders RA, Pratilas CA, Llosa NJ. Zhang L, et al. Among authors: banerjee j. Clin Cancer Res. 2024 Dec 2;30(23):5459-5472. doi: 10.1158/1078-0432.CCR-24-1454. Clin Cancer Res. 2024. PMID: 39321200
Pathology-specific lipid alterations with triacylglycerol as a potential biomarker in Focal cortical dysplasia (FCD) and Mesial Temporal Lobe Epilepsy with Hippocampal Sclerosis (MTLE-HS).
Yadav N, Anand S, Kumar K, Doddmani R, Tripathi M, Chandra P, Lalwani S, Sharma MC, Banerjee J, Dixit A. Yadav N, et al. Among authors: banerjee j. Neuroscience. 2024 Dec 21:S0306-4522(24)00745-0. doi: 10.1016/j.neuroscience.2024.12.038. Online ahead of print. Neuroscience. 2024. PMID: 39716487
Virtual Home Care for Patients With Acute Illness.
Banerjee J, Lynch C, Gordon H, Coffey CE Jr, Canamar CP, Tangpraphaphorn S, Gonzalez K, Mahajan N, Shoenberger J, Menchine M, Oh A, Johnson E, Grassini M, Baden R, Holtom P, Hutcheon D, Wiley BM, Davar K, Mallet-Smith S, Sanfratello M, Gallardo B, Song M, Swain N, Solis ML, Silva J, Pablico C, Aceves E, Bonilla E, Legaspi RA, Guevara DM, Lee K, Martinez C, Banh M, Russell D, Cervantes L, Cervantes J, Gonzalez C, Sheth P, Dowlatshahi S, Rosenberg A, Patel P, Lee WA, Khan T, Tan TW, Fong M, Gordon SS, Clark B, Pena V, Dohi S, Bannister B, Villalta R, Induru P, Vuong P, Lwe D, Stoffel K, Oh S, Voyageur C, Cool A, Lee Y, Lenh S, Luong J, Hanna G, Doctor JN, Munoz B, Castro C, Solis E, Blake N, Sakzalyan R, Rodriguez CJ, Ghaly C, Orozco J, Yee HF Jr, Spellberg B. Banerjee J, et al. JAMA Netw Open. 2024 Nov 4;7(11):e2447352. doi: 10.1001/jamanetworkopen.2024.47352. JAMA Netw Open. 2024. PMID: 39589741 Free PMC article.
520 results