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Rapid and sensitive detection of genome contamination at scale with FCS-GX.
Astashyn A, Tvedte ES, Sweeney D, Sapojnikov V, Bouk N, Joukov V, Mozes E, Strope PK, Sylla PM, Wagner L, Bidwell SL, Clark K, Davis EW, Smith-White B, Hlavina W, Pruitt KD, Schneider VA, Murphy TD. Astashyn A, et al. Among authors: schneider va. bioRxiv [Preprint]. 2023 Jun 6:2023.06.02.543519. doi: 10.1101/2023.06.02.543519. bioRxiv. 2023. Update in: Genome Biol. 2024 Feb 26;25(1):60. doi: 10.1186/s13059-024-03198-7 PMID: 37292984 Free PMC article. Updated. Preprint.
Interactive visualization of whole eukaryote genome alignments using NCBI's Comparative Genome Viewer (CGV).
Rangwala SH, Rudnev DV, Ananiev VV, Asztalos A, Benica B, Borodin EA, Bouk N, Evgeniev VI, Kodali VK, Lotov V, Mozes E, Oh DH, Omelchenko MV, Savkina S, Sukharnikov E, Virothaisakun J, Murphy TD, Pruitt KD, Schneider VA. Rangwala SH, et al. Among authors: schneider va. bioRxiv [Preprint]. 2023 Nov 29:2023.10.30.564672. doi: 10.1101/2023.10.30.564672. bioRxiv. 2023. Update in: PLoS Biol. 2024 May 7;22(5):e3002405. doi: 10.1371/journal.pbio.3002405 PMID: 38077029 Free PMC article. Updated. Preprint.
Rapid and sensitive detection of genome contamination at scale with FCS-GX.
Astashyn A, Tvedte ES, Sweeney D, Sapojnikov V, Bouk N, Joukov V, Mozes E, Strope PK, Sylla PM, Wagner L, Bidwell SL, Brown LC, Clark K, Davis EW, Smith-White B, Hlavina W, Pruitt KD, Schneider VA, Murphy TD. Astashyn A, et al. Among authors: schneider va. Genome Biol. 2024 Feb 26;25(1):60. doi: 10.1186/s13059-024-03198-7. Genome Biol. 2024. PMID: 38409096 Free PMC article.
The NCBI Comparative Genome Viewer (CGV) is an interactive visualization tool for the analysis of whole-genome eukaryotic alignments.
Rangwala SH, Rudnev DV, Ananiev VV, Oh DH, Asztalos A, Benica B, Borodin EA, Bouk N, Evgeniev VI, Kodali VK, Lotov V, Mozes E, Omelchenko MV, Savkina S, Sukharnikov E, Virothaisakun J, Murphy TD, Pruitt KD, Schneider VA. Rangwala SH, et al. Among authors: schneider va. PLoS Biol. 2024 May 7;22(5):e3002405. doi: 10.1371/journal.pbio.3002405. eCollection 2024 May. PLoS Biol. 2024. PMID: 38713717 Free PMC article.
Database resources of the National Center for Biotechnology Information in 2025.
Sayers EW, Beck J, Bolton EE, Brister JR, Chan J, Connor R, Feldgarden M, Fine AM, Funk K, Hoffman J, Kannan S, Kelly C, Klimke W, Kim S, Lathrop S, Marchler-Bauer A, Murphy TD, O'Sullivan C, Schmieder E, Skripchenko Y, Stine A, Thibaud-Nissen F, Wang J, Ye J, Zellers E, Schneider VA, Pruitt KD. Sayers EW, et al. Among authors: schneider va. Nucleic Acids Res. 2025 Jan 6;53(D1):D20-D29. doi: 10.1093/nar/gkae979. Nucleic Acids Res. 2025. PMID: 39526373 Free PMC article.
GenBank 2025 update.
Sayers EW, Cavanaugh M, Frisse L, Pruitt KD, Schneider VA, Underwood BA, Yankie L, Karsch-Mizrachi I. Sayers EW, et al. Among authors: schneider va. Nucleic Acids Res. 2025 Jan 6;53(D1):D56-D61. doi: 10.1093/nar/gkae1114. Nucleic Acids Res. 2025. PMID: 39558184 Free PMC article.
60 results