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Structural variation in the pangenome of wild and domesticated barley.
Jayakodi M, Lu Q, Pidon H, Rabanus-Wallace MT, Bayer M, Lux T, Guo Y, Jaegle B, Badea A, Bekele W, Brar GS, Braune K, Bunk B, Chalmers KJ, Chapman B, Jørgensen ME, Feng JW, Feser M, Fiebig A, Gundlach H, Guo W, Haberer G, Hansson M, Himmelbach A, Hoffie I, Hoffie RE, Hu H, Isobe S, König P, Kale SM, Kamal N, Keeble-Gagnère G, Keller B, Knauft M, Koppolu R, Krattinger SG, Kumlehn J, Langridge P, Li C, Marone MP, Maurer A, Mayer KFX, Melzer M, Muehlbauer GJ, Murozuka E, Padmarasu S, Perovic D, Pillen K, Pin PA, Pozniak CJ, Ramsay L, Pedas PR, Rutten T, Sakuma S, Sato K, Schüler D, Schmutzer T, Scholz U, Schreiber M, Shirasawa K, Simpson C, Skadhauge B, Spannagl M, Steffenson BJ, Thomsen HC, Tibbits JF, Nielsen MTS, Trautewig C, Vequaud D, Voss C, Wang P, Waugh R, Westcott S, Rasmussen MW, Zhang R, Zhang XQ, Wicker T, Dockter C, Mascher M, Stein N. Jayakodi M, et al. Among authors: simpson c. Nature. 2024 Dec;636(8043):654-662. doi: 10.1038/s41586-024-08187-1. Epub 2024 Nov 13. Nature. 2024. PMID: 39537924 Free PMC article.
INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1.
Ramsay L, Comadran J, Druka A, Marshall DF, Thomas WT, Macaulay M, MacKenzie K, Simpson C, Fuller J, Bonar N, Hayes PM, Lundqvist U, Franckowiak JD, Close TJ, Muehlbauer GJ, Waugh R. Ramsay L, et al. Among authors: simpson c. Nat Genet. 2011 Feb;43(2):169-72. doi: 10.1038/ng.745. Epub 2011 Jan 9. Nat Genet. 2011. PMID: 21217754
Genomic signatures of barley breeding for environmental adaptation to the new continents.
Hu H, Wang P, Angessa TT, Zhang XQ, Chalmers KJ, Zhou G, Hill CB, Jia Y, Simpson C, Fuller J, Saxena A, Al Shamaileh H, Iqbal M, Chapman B, Kaur P, Dudchenko O, Aiden EL, Keeble-Gagnere G, Westcott S, Leah D, Tibbits JF, Waugh R, Langridge P, Varshney R, He T, Li C. Hu H, et al. Among authors: simpson c. Plant Biotechnol J. 2023 Sep;21(9):1719-1721. doi: 10.1111/pbi.14077. Epub 2023 Jul 27. Plant Biotechnol J. 2023. PMID: 37497741 Free PMC article. No abstract available.
EORNA, a barley gene and transcript abundance database.
Milne L, Bayer M, Rapazote-Flores P, Mayer CD, Waugh R, Simpson CG. Milne L, et al. Sci Data. 2021 Mar 25;8(1):90. doi: 10.1038/s41597-021-00872-4. Sci Data. 2021. PMID: 33767193 Free PMC article.
BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq.
Rapazote-Flores P, Bayer M, Milne L, Mayer CD, Fuller J, Guo W, Hedley PE, Morris J, Halpin C, Kam J, McKim SM, Zwirek M, Casao MC, Barakate A, Schreiber M, Stephen G, Zhang R, Brown JWS, Waugh R, Simpson CG. Rapazote-Flores P, et al. Among authors: simpson cg. BMC Genomics. 2019 Dec 11;20(1):968. doi: 10.1186/s12864-019-6243-7. BMC Genomics. 2019. PMID: 31829136 Free PMC article.
2,060 results