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Escherichia coli from six European countries reveals differences in profile and distribution of critical antimicrobial resistance determinants within One Health compartments, 2013 to 2020.
Kaspersen HP, Brouwer MS, Nunez-Garcia J, Cárdenas-Rey I, AbuOun M, Duggett N, Ellaby N, Delgado-Blas J, Hammerl JA, Getino M, Serna C, Naas T, Veldman KT, Bossers A, Sunde M, Mo SS, Jørgensen SB, Ellington M, Gonzalez-Zorn B, La Ragione R, Glaser P, Anjum MF. Kaspersen HP, et al. Among authors: abuoun m. Euro Surveill. 2024 Nov;29(47):2400295. doi: 10.2807/1560-7917.ES.2024.29.47.2400295. Euro Surveill. 2024. PMID: 39574393 Free PMC article.
Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes.
Gand M, Navickaite I, Bartsch LJ, Grützke J, Overballe-Petersen S, Rasmussen A, Otani S, Michelacci V, Matamoros BR, González-Zorn B, Brouwer MSM, Di Marcantonio L, Bloemen B, Vanneste K, Roosens NHCJ, AbuOun M, De Keersmaecker SCJ. Gand M, et al. Among authors: abuoun m. Front Microbiol. 2024 Apr 4;15:1336532. doi: 10.3389/fmicb.2024.1336532. eCollection 2024. Front Microbiol. 2024. PMID: 38659981 Free PMC article.
Discordance between different bioinformatic methods for identifying resistance genes from short-read genomic data, with a focus on Escherichia coli.
Davies TJ, Swann J, Sheppard AE, Pickford H, Lipworth S, AbuOun M, Ellington MJ, Fowler PW, Hopkins S, Hopkins KL, Crook DW, Peto TEA, Anjum MF, Walker AS, Stoesser N. Davies TJ, et al. Among authors: abuoun m. Microb Genom. 2023 Dec;9(12):001151. doi: 10.1099/mgen.0.001151. Microb Genom. 2023. PMID: 38100178 Free PMC article.
Corrigendum: Pathogen genomics and phage-based solutions for accurately identifying and controlling Salmonella pathogens.
Lopez-Garcia AV, AbuOun M, Nunez-Garcia J, Nale JY, Gaylov EE, Phothaworn P, Sukjoi C, Thiennimitr P, Malik DJ, Korbsrisate S, Clokie MRJ, Anjum MF. Lopez-Garcia AV, et al. Among authors: abuoun m. Front Microbiol. 2023 Aug 8;14:1221779. doi: 10.3389/fmicb.2023.1221779. eCollection 2023. Front Microbiol. 2023. PMID: 37614593 Free PMC article.
70 results