Deredge DJ - Search Results

1

Identification of an Intrinsically Disordered Region (IDR) in Arginyltransferase 1 (ATE1).

Cartwright M, Parakra R, Oduwole A, Zhang F, Deredge DJ, Smith AT. Cartwright M, et al. Among authors: deredge dj. Biochemistry. 2024 Dec 17;63(24):3236-3249. doi: 10.1021/acs.biochem.4c00512. Epub 2024 Dec 6. Biochemistry. 2024. PMID: 39642180

2

A fusion of the Bacteroides fragilis ferrous iron import proteins reveals a role for FeoA in stabilizing GTP-bound FeoB.

Sestok AE, Brown JB, Obi JO, O'Sullivan SM, Garcin ED, Deredge DJ, Smith AT. Sestok AE, et al. Among authors: deredge dj. J Biol Chem. 2022 Apr;298(4):101808. doi: 10.1016/j.jbc.2022.101808. Epub 2022 Mar 8. J Biol Chem. 2022. PMID: 35271852 Free PMC article.

3

A structure and function relationship study to identify the impact of the R721G mutation in the human mitochondrial lon protease.

Sha Z, Montano MM, Rochon K, Mears JA, Deredge D, Wintrode P, Szweda L, Mikita N, Lee I. Sha Z, et al. Arch Biochem Biophys. 2021 Oct 15;710:108983. doi: 10.1016/j.abb.2021.108983. Epub 2021 Jul 3. Arch Biochem Biophys. 2021. PMID: 34228963 Free PMC article.

4

Integration of Hydrogen-Deuterium Exchange Mass Spectrometry with Molecular Dynamics Simulations and Ensemble Reweighting Enables High Resolution Protein-Ligand Modeling.

Kihn KC, Purdy O, Lowe V, Slachtova L, Smith AK, Shapiro P, Deredge DJ. Kihn KC, et al. Among authors: deredge dj. J Am Soc Mass Spectrom. 2024 Nov 6;35(11):2714-2728. doi: 10.1021/jasms.4c00202. Epub 2024 Sep 10. J Am Soc Mass Spectrom. 2024. PMID: 39254669

5

Development and characterization of nanobodies that specifically target the oncogenic Phosphatase of Regenerating Liver-3 (PRL-3) and impact its interaction with a known binding partner, CNNM3.

Smith CN, Kihn K, Williamson ZA, Chow KM, Hersh LB, Korotkov KV, Deredge D, Blackburn JS. Smith CN, et al. PLoS One. 2023 May 23;18(5):e0285964. doi: 10.1371/journal.pone.0285964. eCollection 2023. PLoS One. 2023. PMID: 37220097 Free PMC article.

6

A dimer interface mutation in glyceraldehyde-3-phosphate dehydrogenase regulates its binding to AU-rich RNA.

White MR, Khan MM, Deredge D, Ross CR, Quintyn R, Zucconi BE, Wysocki VH, Wintrode PL, Wilson GM, Garcin ED. White MR, et al. J Biol Chem. 2015 Jan 16;290(3):1770-85. doi: 10.1074/jbc.M114.618165. Epub 2014 Dec 1. J Biol Chem. 2015. PMID: 25451934 Free PMC article.

7

The conformational landscape of a serpin N-terminal subdomain facilitates folding and in-cell quality control.

Kaur U, Kihn KC, Ke H, Kuo W, Gierasch LM, Hebert DN, Wintrode PL, Deredge D, Gershenson A. Kaur U, et al. bioRxiv [Preprint]. 2023 Apr 26:2023.04.24.537978. doi: 10.1101/2023.04.24.537978. bioRxiv. 2023. PMID: 37163105 Free PMC article. Preprint.

8

Coupling of zinc and GTP binding drives G-domain folding in Acinetobacter baumannii ZigA.

Osterberg MK, Smith AK, Campbell C, Deredge DJ, Stemmler TL, Giedroc DP. Osterberg MK, et al. Among authors: deredge dj. Biophys J. 2024 Apr 16;123(8):979-991. doi: 10.1016/j.bpj.2024.03.010. Epub 2024 Mar 8. Biophys J. 2024. PMID: 38459695 Free article.

9

A temperature-dependent conformational shift in p38α MAPK substrate-binding region associated with changes in substrate phosphorylation profile.

Deredge D, Wintrode PL, Tulapurkar ME, Nagarsekar A, Zhang Y, Weber DJ, Shapiro P, Hasday JD. Deredge D, et al. J Biol Chem. 2019 Aug 23;294(34):12624-12637. doi: 10.1074/jbc.RA119.007525. Epub 2019 Jun 18. J Biol Chem. 2019. PMID: 31213525 Free PMC article.

10

Modeling the native ensemble of PhuS using enhanced sampling MD and HDX-ensemble reweighting.

Kihn KC, Wilson T, Smith AK, Bradshaw RT, Wintrode PL, Forrest LR, Wilks A, Deredge DJ. Kihn KC, et al. Among authors: deredge dj. Biophys J. 2021 Dec 7;120(23):5141-5157. doi: 10.1016/j.bpj.2021.11.010. Epub 2021 Nov 10. Biophys J. 2021. PMID: 34767787 Free PMC article.

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