Xu X - Search Results

1

In silico screening of protein-binding peptides with an application to developing peptide inhibitors against antibiotic resistance.

Xu X, Kao WL, Wang A, Lee HJ, Duan R, Holmes H, Gallazzi F, Ji J, Sun H, Heng X, Zou X. Xu X, et al. PNAS Nexus. 2024 Nov 27;3(12):pgae541. doi: 10.1093/pnasnexus/pgae541. eCollection 2024 Dec. PNAS Nexus. 2024. PMID: 39660074 Free PMC article.

2

SM-TF: A structural database of small molecule-transcription factor complexes.

Xu X, Ma Z, Sun H, Zou X. Xu X, et al. J Comput Chem. 2016 Jun 30;37(17):1559-64. doi: 10.1002/jcc.24370. Epub 2016 Mar 24. J Comput Chem. 2016. PMID: 27010673 Free PMC article.

3

Fully Blind Docking at the Atomic Level for Protein-Peptide Complex Structure Prediction.

Yan C, Xu X, Zou X. Yan C, et al. Among authors: xu x. Structure. 2016 Oct 4;24(10):1842-1853. doi: 10.1016/j.str.2016.07.021. Epub 2016 Sep 15. Structure. 2016. PMID: 27642160 Free PMC article.

4

The Usage of ACCLUSTER for Peptide Binding Site Prediction.

Yan C, Xu X, Zou X. Yan C, et al. Among authors: xu x. Methods Mol Biol. 2017;1561:3-9. doi: 10.1007/978-1-4939-6798-8_1. Methods Mol Biol. 2017. PMID: 28236229

5

MDockPeP: An ab-initio protein-peptide docking server.

Xu X, Yan C, Zou X. Xu X, et al. J Comput Chem. 2018 Oct 30;39(28):2409-2413. doi: 10.1002/jcc.25555. Epub 2018 Oct 23. J Comput Chem. 2018. PMID: 30368849 Free PMC article.

6

Predicting protein-ligand binding modes for CELPP and GC3: workflows and insight.

Xu X, Ma Z, Duan R, Zou X. Xu X, et al. J Comput Aided Mol Des. 2019 Mar;33(3):367-374. doi: 10.1007/s10822-019-00185-0. Epub 2019 Jan 28. J Comput Aided Mol Des. 2019. PMID: 30689079 Free PMC article.

7

PepPro: A Nonredundant Structure Data Set for Benchmarking Peptide-Protein Computational Docking.

Xu X, Zou X. Xu X, et al. J Comput Chem. 2020 Feb 5;41(4):362-369. doi: 10.1002/jcc.26114. Epub 2019 Dec 2. J Comput Chem. 2020. PMID: 31793016 Free PMC article.

8

MDockPeP: A Web Server for Blind Prediction of Protein-Peptide Complex Structures.

Xu X, Zou X. Xu X, et al. Methods Mol Biol. 2020;2165:259-272. doi: 10.1007/978-1-0716-0708-4_15. Methods Mol Biol. 2020. PMID: 32621230

9

Xu X, Zou X. Xu X, et al. Int J Mol Sci. 2021 Nov 15;22(22):12320. doi: 10.3390/ijms222212320. Int J Mol Sci. 2021. PMID: 34830201 Free PMC article.

10

Predicting Protein-Peptide Complex Structures by Accounting for Peptide Flexibility and the Physicochemical Environment.

Xu X, Zou X. Xu X, et al. J Chem Inf Model. 2022 Jan 10;62(1):27-39. doi: 10.1021/acs.jcim.1c00836. Epub 2021 Dec 21. J Chem Inf Model. 2022. PMID: 34931833 Free PMC article.

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