Chapagain PP - Search Results

1

Characterization of molecular interactions between HDAC7 and MEF2A.

Gautam N, Chapagain PP, Adhikari NP, Tiwari PB. Gautam N, et al. Among authors: chapagain pp. J Biomol Struct Dyn. 2024 Dec 11:1-10. doi: 10.1080/07391102.2024.2437523. Online ahead of print. J Biomol Struct Dyn. 2024. PMID: 39660765

2

Characterization of molecular interactions between Escherichia coli RNA polymerase and topoisomerase I by molecular simulations.

Tiwari PB, Chapagain PP, Banda S, Darici Y, Üren A, Tse-Dinh YC. Tiwari PB, et al. Among authors: chapagain pp. FEBS Lett. 2016 Sep;590(17):2844-51. doi: 10.1002/1873-3468.12321. Epub 2016 Aug 4. FEBS Lett. 2016. PMID: 27448274 Free PMC article.

3

Investigating molecular interactions between oxidized neuroglobin and cytochrome c.

Tiwari PB, Chapagain PP, Üren A. Tiwari PB, et al. Among authors: chapagain pp. Sci Rep. 2018 Jul 12;8(1):10557. doi: 10.1038/s41598-018-28836-6. Sci Rep. 2018. PMID: 30002427 Free PMC article.

4

Structural insights into the repair mechanism of AGT for methyl-induced DNA damage.

Koirala RP, Pokhrel R, Baral P, Tiwari PB, Chapagain PP, Adhikari NP. Koirala RP, et al. Among authors: chapagain pp. Biol Chem. 2021 Jun 30;402(10):1203-1211. doi: 10.1515/hsz-2021-0198. Print 2021 Sep 27. Biol Chem. 2021. PMID: 34192828

5

A 5'-Flanking C/G Pair at the Core Region Enhances the Recognition and Binding of Kaiso to Methylated DNA.

Thapa B, Adhikari NP, Tiwari PB, Chapagain PP. Thapa B, et al. Among authors: chapagain pp. J Chem Inf Model. 2023 Apr 10;63(7):2095-2103. doi: 10.1021/acs.jcim.2c01294. Epub 2022 Dec 23. J Chem Inf Model. 2023. PMID: 36563044

6

Covalent Complex of DNA and Bacterial Topoisomerase: Implications in Antibacterial Drug Development.

Tiwari PB, Chapagain PP, Seddek A, Annamalai T, Üren A, Tse-Dinh YC. Tiwari PB, et al. Among authors: chapagain pp. ChemMedChem. 2020 Apr 3;15(7):623-631. doi: 10.1002/cmdc.201900721. Epub 2020 Mar 18. ChemMedChem. 2020. PMID: 32043806 Free PMC article.

7

Molecular interactions between perlecan LG3 and the SARS-CoV-2 spike protein receptor binding domain.

Gressett TE, Hossen ML, Talkington G, Volic M, Perez H, Tiwari PB, Chapagain P, Bix G. Gressett TE, et al. Protein Sci. 2024 Jan;33(1):e4843. doi: 10.1002/pro.4843. Protein Sci. 2024. PMID: 37996967 Free PMC article.

8

Insights into the DNA and RNA Interactions of Human Topoisomerase III Beta Using Molecular Dynamics Simulations.

Mamun Y, Tse-Dinh YC, Chapagain P. Mamun Y, et al. J Chem Inf Model. 2024 Aug 12;64(15):6062-6071. doi: 10.1021/acs.jcim.4c00472. Epub 2024 Jul 18. J Chem Inf Model. 2024. PMID: 39024468 Free PMC article.

9

Molecular Dynamics Simulations of Conformational Conversions in Transformer Proteins.

Gerstman BS, Chapagain PP, Gc J, Steckmann T. Gerstman BS, et al. Among authors: chapagain pp. Methods Mol Biol. 2019;1958:297-311. doi: 10.1007/978-1-4939-9161-7_15. Methods Mol Biol. 2019. PMID: 30945225

10

Simulation-Guided Molecular Modeling of Nisin and Lipid II Assembly and Membrane Pore Formation.

Perez HA, Wang Z, Gerstman BS, He J, Chapagain PP. Perez HA, et al. Among authors: chapagain pp. J Chem Inf Model. 2024 Oct 28;64(20):7977-7986. doi: 10.1021/acs.jcim.4c01050. Epub 2024 Oct 7. J Chem Inf Model. 2024. PMID: 39370850

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