Nilsson A - Search Results

1

Author Correction: AutoTransOP: translating omics signatures without orthologue requirements using deep learning.

Meimetis N, Pullen KM, Zhu DY, Nilsson A, Hoang TN, Magliacane S, Lauffenburger DA. Meimetis N, et al. Among authors: nilsson a. NPJ Syst Biol Appl. 2024 Dec 13;10(1):148. doi: 10.1038/s41540-024-00456-z. NPJ Syst Biol Appl. 2024. PMID: 39672816 Free PMC article. No abstract available.

2

AutoTransOP: translating omics signatures without orthologue requirements using deep learning.

Meimetis N, Pullen KM, Zhu DY, Nilsson A, Hoang TN, Magliacane S, Lauffenburger DA. Meimetis N, et al. Among authors: nilsson a. NPJ Syst Biol Appl. 2024 Jan 29;10(1):13. doi: 10.1038/s41540-024-00341-9. NPJ Syst Biol Appl. 2024. PMID: 38287079 Free PMC article.

3

Inference of drug off-target effects on cellular signaling using interactome-based deep learning.

Meimetis N, Lauffenburger DA, Nilsson A. Meimetis N, et al. Among authors: nilsson a. iScience. 2024 Mar 14;27(4):109509. doi: 10.1016/j.isci.2024.109509. eCollection 2024 Apr 19. iScience. 2024. PMID: 38591003 Free PMC article.

4

Artificial neural networks enable genome-scale simulations of intracellular signaling.

Nilsson A, Peters JM, Meimetis N, Bryson B, Lauffenburger DA. Nilsson A, et al. Nat Commun. 2022 Jun 2;13(1):3069. doi: 10.1038/s41467-022-30684-y. Nat Commun. 2022. PMID: 35654811 Free PMC article.

5

Cancer-Associated Fibroblasts and Squamous Epithelial Cells Constitute a Unique Microenvironment in a Mouse Model of Inflammation-Induced Colon Cancer.

Vega PN, Nilsson A, Kumar MP, Niitsu H, Simmons AJ, Ro J, Wang J, Chen Z, Joughin BA, Li W, McKinley ET, Liu Q, Roland JT, Washington MK, Coffey RJ, Lauffenburger DA, Lau KS. Vega PN, et al. Among authors: nilsson a. Front Oncol. 2022 May 4;12:878920. doi: 10.3389/fonc.2022.878920. eCollection 2022. Front Oncol. 2022. PMID: 35600339 Free PMC article.

6

Predicting growth of the healthy infant using a genome scale metabolic model.

Nilsson A, Mardinoglu A, Nielsen J. Nilsson A, et al. NPJ Syst Biol Appl. 2017 Jan 31;3:3. doi: 10.1038/s41540-017-0004-5. eCollection 2017. NPJ Syst Biol Appl. 2017. PMID: 28649430 Free PMC article.

7

Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints.

Sánchez BJ, Zhang C, Nilsson A, Lahtvee PJ, Kerkhoven EJ, Nielsen J. Sánchez BJ, et al. Among authors: nilsson a. Mol Syst Biol. 2017 Aug 3;13(8):935. doi: 10.15252/msb.20167411. Mol Syst Biol. 2017. PMID: 28779005 Free PMC article.

8

Metabolic Models of Protein Allocation Call for the Kinetome.

Nilsson A, Nielsen J, Palsson BO. Nilsson A, et al. Cell Syst. 2017 Dec 27;5(6):538-541. doi: 10.1016/j.cels.2017.11.013. Cell Syst. 2017. PMID: 29284126 Free article.

9

BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data.

Garcia-Albornoz M, Thankaswamy-Kosalai S, Nilsson A, Väremo L, Nookaew I, Nielsen J. Garcia-Albornoz M, et al. Among authors: nilsson a. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W175-81. doi: 10.1093/nar/gku371. Epub 2014 May 3. Nucleic Acids Res. 2014. PMID: 24792167 Free PMC article.

10

A dedicated database system for handling multi-level data in systems biology.

Pornputtapong N, Wanichthanarak K, Nilsson A, Nookaew I, Nielsen J. Pornputtapong N, et al. Among authors: nilsson a. Source Code Biol Med. 2014 Jul 10;9:17. doi: 10.1186/1751-0473-9-17. eCollection 2014. Source Code Biol Med. 2014. PMID: 25053973 Free PMC article.

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