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Analysis of mutations in precision oncology using the automated, accurate, and user-friendly web tool PredictONCO.
Khan RT, Pokorna P, Stourac J, Borko S, Dobias A, Planas-Iglesias J, Mazurenko S, Arefiev I, Pinto G, Szotkowska V, Sterba J, Damborsky J, Slaby O, Bednar D. Khan RT, et al. Among authors: bednar d. Comput Struct Biotechnol J. 2024 Nov 14;24:734-738. doi: 10.1016/j.csbj.2024.11.026. eCollection 2024 Dec. Comput Struct Biotechnol J. 2024. PMID: 39687752 Free PMC article.
Fully automated virtual screening pipeline of FDA-approved drugs using Caver Web.
Musil M, Jezik A, Jankujova M, Stourac J, Galgonek J, Mustafa Eyrilmez S, Vondrasek J, Damborsky J, Bednar D. Musil M, et al. Among authors: bednar d. Comput Struct Biotechnol J. 2022 Nov 17;20:6512-6518. doi: 10.1016/j.csbj.2022.11.031. eCollection 2022. Comput Struct Biotechnol J. 2022. PMID: 36467577 Free PMC article.
PredictONCO: a web tool supporting decision-making in precision oncology by extending the bioinformatics predictions with advanced computing and machine learning.
Stourac J, Borko S, Khan RT, Pokorna P, Dobias A, Planas-Iglesias J, Mazurenko S, Pinto G, Szotkowska V, Sterba J, Slaby O, Damborsky J, Bednar D. Stourac J, et al. Among authors: bednar d. Brief Bioinform. 2023 Nov 22;25(1):bbad441. doi: 10.1093/bib/bbad441. Brief Bioinform. 2023. PMID: 38066711 Free PMC article.
A computational workflow for analysis of missense mutations in precision oncology.
Khan RT, Pokorna P, Stourac J, Borko S, Arefiev I, Planas-Iglesias J, Dobias A, Pinto G, Szotkowska V, Sterba J, Slaby O, Damborsky J, Mazurenko S, Bednar D. Khan RT, et al. Among authors: bednar d. J Cheminform. 2024 Jul 29;16(1):86. doi: 10.1186/s13321-024-00876-3. J Cheminform. 2024. PMID: 39075588 Free PMC article.
FireProt: web server for automated design of thermostable proteins.
Musil M, Stourac J, Bendl J, Brezovsky J, Prokop Z, Zendulka J, Martinek T, Bednar D, Damborsky J. Musil M, et al. Among authors: bednar d. Nucleic Acids Res. 2017 Jul 3;45(W1):W393-W399. doi: 10.1093/nar/gkx285. Nucleic Acids Res. 2017. PMID: 28449074 Free PMC article.
Engineering enzyme access tunnels.
Kokkonen P, Bednar D, Pinto G, Prokop Z, Damborsky J. Kokkonen P, et al. Among authors: bednar d. Biotechnol Adv. 2019 Nov 1;37(6):107386. doi: 10.1016/j.biotechadv.2019.04.008. Epub 2019 Apr 23. Biotechnol Adv. 2019. PMID: 31026496 Free article. Review.
158 results