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CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language.
Kotliar M, Kartashov AV, Barski A. Kotliar M, et al. Among authors: barski a. Gigascience. 2019 Jul 1;8(7):giz084. doi: 10.1093/gigascience/giz084. Gigascience. 2019. PMID: 31321430 Free PMC article.
A sample CWL pipeline for processing of chromatin immunoprecipitation sequencing data is provided. CONCLUSIONS: CWL-Airflow will provide users with the features of a fully fledged pipeline manager and the ability to execute CWL workflows anywhere Airflow can run-fro …
A sample CWL pipeline for processing of chromatin immunoprecipitation sequencing data is provided. CONCLUSIONS: CWL-Airflow will prov …
Analysis of ChIP-Seq and RNA-Seq Data with BioWardrobe.
Vallabh S, Kartashov AV, Barski A. Vallabh S, et al. Among authors: barski a. Methods Mol Biol. 2018;1783:343-360. doi: 10.1007/978-1-4939-7834-2_17. Methods Mol Biol. 2018. PMID: 29767371 Free PMC article.
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
Cazares TA, Rizvi FW, Iyer B, Chen X, Kotliar M, Bejjani AT, Wayman JA, Donmez O, Wronowski B, Parameswaran S, Kottyan LC, Barski A, Weirauch MT, Prasath VBS, Miraldi ER. Cazares TA, et al. Among authors: barski a. PLoS Comput Biol. 2023 Jan 31;19(1):e1010863. doi: 10.1371/journal.pcbi.1010863. eCollection 2023 Jan. PLoS Comput Biol. 2023. PMID: 36719906 Free PMC article.
79 results