Fang Y - Search Results

1

On the probability of necessity and sufficiency of explaining Graph Neural Networks: A lower bound optimization approach.

Cai R, Zhu Y, Chen X, Fang Y, Wu M, Qiao J, Hao Z. Cai R, et al. Among authors: fang y. Neural Netw. 2024 Dec 24;184:107065. doi: 10.1016/j.neunet.2024.107065. Online ahead of print. Neural Netw. 2024. PMID: 39733700

2

Dual-dropout graph convolutional network for predicting synthetic lethality in human cancers.

Cai R, Chen X, Fang Y, Wu M, Hao Y. Cai R, et al. Among authors: fang y. Bioinformatics. 2020 Aug 15;36(16):4458-4465. doi: 10.1093/bioinformatics/btaa211. Bioinformatics. 2020. PMID: 32221609

3

Motif Graph Neural Network.

Chen X, Cai R, Fang Y, Wu M, Li Z, Hao Z. Chen X, et al. Among authors: fang y. IEEE Trans Neural Netw Learn Syst. 2024 Oct;35(10):14833-14847. doi: 10.1109/TNNLS.2023.3281716. Epub 2024 Oct 7. IEEE Trans Neural Netw Learn Syst. 2024. PMID: 37335782

4

Pre-training graph neural networks for link prediction in biomedical networks.

Long Y, Wu M, Liu Y, Fang Y, Kwoh CK, Chen J, Luo J, Li X. Long Y, et al. Among authors: fang y. Bioinformatics. 2022 Apr 12;38(8):2254-2262. doi: 10.1093/bioinformatics/btac100. Bioinformatics. 2022. PMID: 35171981

5

Integrating node embeddings and biological annotations for genes to predict disease-gene associations.

Ata SK, Ou-Yang L, Fang Y, Kwoh CK, Wu M, Li XL. Ata SK, et al. Among authors: fang y. BMC Syst Biol. 2018 Dec 31;12(Suppl 9):138. doi: 10.1186/s12918-018-0662-y. BMC Syst Biol. 2018. PMID: 30598097 Free PMC article.

6

An end-to-end bi-objective approach to deep graph partitioning.

Wei P, Fang Y, Wen Z, Xiao Z, Chen B. Wei P, et al. Among authors: fang y. Neural Netw. 2025 Jan;181:106823. doi: 10.1016/j.neunet.2024.106823. Epub 2024 Oct 21. Neural Netw. 2025. PMID: 39471576

7

Disease Gene Classification with Metagraph Representations.

Ata SK, Fang Y, Wu M, Li XL, Xiao X. Ata SK, et al. Among authors: fang y. Methods Mol Biol. 2018;1807:211-224. doi: 10.1007/978-1-4939-8561-6_16. Methods Mol Biol. 2018. PMID: 30030814

8

Recent advances in network-based methods for disease gene prediction.

Ata SK, Wu M, Fang Y, Ou-Yang L, Kwoh CK, Li XL. Ata SK, et al. Among authors: fang y. Brief Bioinform. 2021 Jul 20;22(4):bbaa303. doi: 10.1093/bib/bbaa303. Brief Bioinform. 2021. PMID: 33276376

9

Disease gene classification with metagraph representations.

Kircali Ata S, Fang Y, Wu M, Li XL, Xiao X. Kircali Ata S, et al. Among authors: fang y. Methods. 2017 Dec 1;131:83-92. doi: 10.1016/j.ymeth.2017.06.036. Epub 2017 Jul 8. Methods. 2017. PMID: 28694066

10

Prediction of Synthetic Lethal Interactions in Human Cancers Using Multi-View Graph Auto-Encoder.

Hao Z, Wu D, Fang Y, Wu M, Cai R, Li X. Hao Z, et al. Among authors: fang y. IEEE J Biomed Health Inform. 2021 Oct;25(10):4041-4051. doi: 10.1109/JBHI.2021.3079302. Epub 2021 Oct 5. IEEE J Biomed Health Inform. 2021. PMID: 33974548

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