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Page 1
MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication.
Cahn J, Regulski M, Lynn J, Ernst E, de Santis Alves C, Ramakrishnan S, Chougule K, Wei S, Lu Z, Xu X, Ramu U, Drenkow J, Kramer M, Seetharam A, Hufford MB, McCombie WR, Ware D, Jackson D, Schatz MC, Gingeras TR, Martienssen RA. Cahn J, et al. Among authors: de santis alves c. Nat Commun. 2024 Dec 30;15(1):10854. doi: 10.1038/s41467-024-55195-w. Nat Commun. 2024. PMID: 39738013 Free PMC article.
Pseudouridine guides germline small RNA transport and epigenetic inheritance.
Herridge RP, Dolata J, Migliori V, de Santis Alves C, Borges F, Schorn AJ, van Ex F, Lin A, Bajczyk M, Parent JS, Leonardi T, Hendrick A, Kouzarides T, Martienssen RA. Herridge RP, et al. Among authors: de santis alves c. Nat Struct Mol Biol. 2024 Sep 6. doi: 10.1038/s41594-024-01392-6. Online ahead of print. Nat Struct Mol Biol. 2024. PMID: 39242979
Teosinte Pollen Drive guides maize diversification and domestication by RNAi.
Berube B, Ernst E, Cahn J, Roche B, de Santis Alves C, Lynn J, Scheben A, Grimanelli D, Siepel A, Ross-Ibarra J, Kermicle J, Martienssen RA. Berube B, et al. Among authors: de santis alves c. Nature. 2024 Sep;633(8029):380-388. doi: 10.1038/s41586-024-07788-0. Epub 2024 Aug 7. Nature. 2024. PMID: 39112710 Free PMC article.
The genome of the Wollemi pine, a critically endangered "living fossil" unchanged since the Cretaceous, reveals extensive ancient transposon activity.
Stevenson DW, Ramakrishnan S, de Santis Alves C, Coelho LA, Kramer M, Goodwin S, Ramos OM, Eshel G, Sondervan VM, Frangos S, Zumajo-Cardona C, Jenike K, Ou S, Wang X, Lee YP, Loke S, Rossetto M, McPherson H, Nigris S, Moschin S, Little DP, Katari MS, Varala K, Kolokotronis SO, Ambrose B, Croft LJ, Coruzzi GM, Schatz M, McCombie WR, Martienssen RA. Stevenson DW, et al. Among authors: de santis alves c. bioRxiv [Preprint]. 2023 Aug 24:2023.08.24.554647. doi: 10.1101/2023.08.24.554647. bioRxiv. 2023. PMID: 37662366 Free PMC article. Preprint.
Teosinte Pollen Drive guides maize diversification and domestication by RNAi.
Berube B, Ernst E, Cahn J, Roche B, de Santis Alves C, Lynn J, Scheben A, Siepel A, Ross-Ibarra J, Kermicle J, Martienssen R. Berube B, et al. Among authors: de santis alves c. bioRxiv [Preprint]. 2023 Nov 10:2023.07.12.548689. doi: 10.1101/2023.07.12.548689. bioRxiv. 2023. Update in: Nature. 2024 Sep;633(8029):380-388. doi: 10.1038/s41586-024-07788-0 PMID: 37503269 Free PMC article. Updated. Preprint.
Pseudouridine guides germline small RNA transport and epigenetic inheritance.
Herridge RP, Dolata J, Migliori V, de Santis Alves C, Borges F, Schorn AJ, Van Ex F, Parent JS, Lin A, Bajczyk M, Leonardi T, Hendrick A, Kouzarides T, Martienssen RA. Herridge RP, et al. Among authors: de santis alves c. bioRxiv [Preprint]. 2023 Nov 3:2023.05.27.542553. doi: 10.1101/2023.05.27.542553. bioRxiv. 2023. Update in: Nat Struct Mol Biol. 2024 Sep 6. doi: 10.1038/s41594-024-01392-6 PMID: 37398006 Free PMC article. Updated. Preprint.