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Learning the language of antibody hypervariability.
Singh R, Im C, Qiu Y, Mackness B, Gupta A, Joren T, Sledzieski S, Erlach L, Wendt M, Fomekong Nanfack Y, Bryson B, Berger B. Singh R, et al. Among authors: sledzieski s. Proc Natl Acad Sci U S A. 2025 Jan 7;122(1):e2418918121. doi: 10.1073/pnas.2418918121. Epub 2024 Dec 30. Proc Natl Acad Sci U S A. 2025. PMID: 39793083 Free PMC article.
Decoding the Functional Interactome of Non-Model Organisms with PHILHARMONIC.
Sledzieski S, Versavel C, Singh R, Ocitti F, Devkota K, Kumar L, Shpilker P, Roger L, Yang J, Lewinski N, Putnam H, Berger B, Klein-Seetharaman J, Cowen L. Sledzieski S, et al. bioRxiv [Preprint]. 2025 Jan 14:2024.10.25.620267. doi: 10.1101/2024.10.25.620267. bioRxiv. 2025. PMID: 39553947 Free PMC article. Preprint.
Democratizing protein language models with parameter-efficient fine-tuning.
Sledzieski S, Kshirsagar M, Baek M, Dodhia R, Lavista Ferres J, Berger B. Sledzieski S, et al. Proc Natl Acad Sci U S A. 2024 Jun 25;121(26):e2405840121. doi: 10.1073/pnas.2405840121. Epub 2024 Jun 20. Proc Natl Acad Sci U S A. 2024. PMID: 38900798 Free PMC article.
Rapid and accurate prediction of protein homo-oligomer symmetry with Seq2Symm.
Kshirsagar M, Meller A, Humphreys I, Sledzieski S, Xu Y, Dodhia R, Horvitz E, Berger B, Bowman G, Ferres JL, Baker D, Baek M. Kshirsagar M, et al. Among authors: sledzieski s. Res Sq [Preprint]. 2024 Apr 26:rs.3.rs-4215086. doi: 10.21203/rs.3.rs-4215086/v1. Res Sq. 2024. PMID: 38746169 Free PMC article. Preprint.
Transfer of knowledge from model organisms to evolutionarily distant non-model organisms: The coral Pocillopora damicornis membrane signaling receptome.
Kumar L, Brenner N, Sledzieski S, Olaosebikan M, Roger LM, Lynn-Goin M, Klein-Seetharaman R, Berger B, Putnam H, Yang J, Lewinski NA, Singh R, Daniels NM, Cowen L, Klein-Seetharaman J. Kumar L, et al. Among authors: sledzieski s. PLoS One. 2023 Feb 3;18(2):e0270965. doi: 10.1371/journal.pone.0270965. eCollection 2023. PLoS One. 2023. PMID: 36735673 Free PMC article.
12 results