460129525/Deutsche Forschungsgemeinschaft[Grants and Funding] - Search Results

Year	Number of Results
2022	2
2023	6
2024	3

1

Challenges and opportunities in sharing microbiome data and analyses.

Huttenhower C, Finn RD, McHardy AC. Huttenhower C, et al. Nat Microbiol. 2023 Nov;8(11):1960-1970. doi: 10.1038/s41564-023-01484-x. Epub 2023 Oct 2. Nat Microbiol. 2023. PMID: 37783751 Review.

2

Identification of Huge Phages from Wastewater Metagenomes.

Kallies R, Hu D, Abdulkadir N, Schloter M, Rocha U. Kallies R, et al. Viruses. 2023 Nov 28;15(12):2330. doi: 10.3390/v15122330. Viruses. 2023. PMID: 38140571 Free PMC article.

3

MarineMetagenomeDB: a public repository for curated and standardized metadata for marine metagenomes.

Nata'ala MK, Avila Santos AP, Coelho Kasmanas J, Bartholomäus A, Saraiva JP, Godinho Silva S, Keller-Costa T, Costa R, Gomes NCM, Ponce de Leon Ferreira de Carvalho AC, Stadler PF, Sipoli Sanches D, Nunes da Rocha U. Nata'ala MK, et al. Environ Microbiome. 2022 Nov 18;17(1):57. doi: 10.1186/s40793-022-00449-7. Environ Microbiome. 2022. PMID: 36401317 Free PMC article.

4

MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy.

Rocha U, Coelho Kasmanas J, Kallies R, Saraiva JP, Toscan RB, Štefanič P, Bicalho MF, Borim Correa F, Baştürk MN, Fousekis E, Viana Barbosa LM, Plewka J, Probst AJ, Baldrian P, Stadler PF; CLUE-TERRA Consortium. Rocha U, et al. Mol Ecol Resour. 2024 Feb;24(2):e13904. doi: 10.1111/1755-0998.13904. Epub 2023 Nov 23. Mol Ecol Resour. 2024. PMID: 37994269

5

Information Theory for Biological Sequence Classification: A Novel Feature Extraction Technique Based on Tsallis Entropy.

Bonidia RP, Avila Santos AP, de Almeida BLS, Stadler PF, Nunes da Rocha U, Sanches DS, de Carvalho ACPLF. Bonidia RP, et al. Entropy (Basel). 2022 Oct 1;24(10):1398. doi: 10.3390/e24101398. Entropy (Basel). 2022. PMID: 37420418 Free PMC article.

6

Recovery of 197 eukaryotic bins reveals major challenges for eukaryote genome reconstruction from terrestrial metagenomes.

Saraiva JP, Bartholomäus A, Toscan RB, Baldrian P, Nunes da Rocha U. Saraiva JP, et al. Mol Ecol Resour. 2023 Jul;23(5):1066-1076. doi: 10.1111/1755-0998.13776. Epub 2023 Mar 20. Mol Ecol Resour. 2023. PMID: 36847735

7

Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater.

Abdulkadir N, Saraiva JP, Zhang J, Stolte S, Gillor O, Harms H, Rocha U. Abdulkadir N, et al. Microbiol Spectr. 2024 Mar 5;12(3):e0291823. doi: 10.1128/spectrum.02918-23. Epub 2024 Jan 30. Microbiol Spectr. 2024. PMID: 38289113 Free PMC article.

8

Natural product biosynthetic potential reflects macroevolutionary diversification within a widely distributed bacterial taxon.

Silva SG, Nabhan Homsi M, Keller-Costa T, Rocha U, Costa R. Silva SG, et al. mSystems. 2023 Dec 21;8(6):e0064323. doi: 10.1128/msystems.00643-23. Epub 2023 Nov 29. mSystems. 2023. PMID: 38018967 Free PMC article.

9

Draft genome of Bacillus velezensis CMRP6330, a suitable biocontrol agent for disease management in crops.

Teixeira GM, Cordeiro Montanari GC, Nicoletto MLA, da Silva DV, Noriler SA, de Oliveira JP, da Silva Rodrigues MV, Sipoli Sanches D, de Padua Pereira U, Nunes da Rocha U, Oliveira AGd. Teixeira GM, et al. Microbiol Resour Announc. 2024 Dec 12;13(12):e0065724. doi: 10.1128/mra.00657-24. Epub 2024 Nov 6. Microbiol Resour Announc. 2024. PMID: 39503489 Free PMC article.

10

Combining Flow Cytometry and Metagenomics Improves Recovery of Metagenome-Assembled Genomes in a Cell Culture from Activated Sludge.

Abdulkadir N, Saraiva JP, Schattenberg F, Toscan RB, Borim Correa F, Harms H, Müller S, da Rocha UN. Abdulkadir N, et al. Microorganisms. 2023 Jan 10;11(1):175. doi: 10.3390/microorganisms11010175. Microorganisms. 2023. PMID: 36677467 Free PMC article.

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