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Chromosome conformation capture.
Cope NF, Fraser P. Cope NF, et al. Cold Spring Harb Protoc. 2009 Feb;2009(2):pdb.prot5137. doi: 10.1101/pdb.prot5137. Cold Spring Harb Protoc. 2009. PMID: 20147067 No abstract available.
The transcriptional interactome: gene expression in 3D.
Schoenfelder S, Clay I, Fraser P. Schoenfelder S, et al. Curr Opin Genet Dev. 2010 Apr;20(2):127-33. doi: 10.1016/j.gde.2010.02.002. Epub 2010 Mar 6. Curr Opin Genet Dev. 2010. PMID: 20211559 Review.
The yin and yang of chromatin spatial organization.
Cope NF, Fraser P, Eskiw CH. Cope NF, et al. Genome Biol. 2010;11(3):204. doi: 10.1186/gb-2010-11-3-204. Epub 2010 Mar 29. Genome Biol. 2010. PMID: 20353545 Free PMC article. Review.
Nuclear RNA sequencing of the mouse erythroid cell transcriptome.
Mitchell JA, Clay I, Umlauf D, Chen CY, Moir CA, Eskiw CH, Schoenfelder S, Chakalova L, Nagano T, Fraser P. Mitchell JA, et al. PLoS One. 2012;7(11):e49274. doi: 10.1371/journal.pone.0049274. Epub 2012 Nov 29. PLoS One. 2012. PMID: 23209567 Free PMC article.
A dynamical model reveals gene co-localizations in nucleus.
Kang J, Xu B, Yao Y, Lin W, Hennessy C, Fraser P, Feng J. Kang J, et al. PLoS Comput Biol. 2011 Jul;7(7):e1002094. doi: 10.1371/journal.pcbi.1002094. Epub 2011 Jul 7. PLoS Comput Biol. 2011. PMID: 21760760 Free PMC article.
Long-range DNA looping and gene expression analyses identify DEXI as an autoimmune disease candidate gene.
Davison LJ, Wallace C, Cooper JD, Cope NF, Wilson NK, Smyth DJ, Howson JM, Saleh N, Al-Jeffery A, Angus KL, Stevens HE, Nutland S, Duley S, Coulson RM, Walker NM, Burren OS, Rice CM, Cambien F, Zeller T, Munzel T, Lackner K, Blakenberg S; Cardiogenics Consortium; Fraser P, Gottgens B, Todd JA, Attwood T, Belz S, Braund P, Cambien F, Cooper J, Crisp-Hihn A, Diemert P, Deloukas P, Foad N, Erdmann J, Goodall AH, Gracey J, Gray E, Williams RG, Heimerl S, Hengstenberg C, Jolley J, Krishnan U, Lloyd-Jones H, Lugauer I, Lundmark P, Maouche S, Moore JS, Muir D, Murray E, Nelson CP, Neudert J, Niblett D, O'Leary K, Ouwehand WH, Pollard H, Rankin A, Rice CM, Sager H, Samani NJ, Sambrook J, Schmitz G, Scholz M, Schroeder L, Schunkert H, Syvannen AC, Tennstedt S, Wallace C. Davison LJ, et al. Hum Mol Genet. 2012 Jan 15;21(2):322-33. doi: 10.1093/hmg/ddr468. Epub 2011 Oct 11. Hum Mol Genet. 2012. PMID: 21989056 Free PMC article.
Transcription factories and nuclear organization of the genome.
Eskiw CH, Cope NF, Clay I, Schoenfelder S, Nagano T, Fraser P. Eskiw CH, et al. Cold Spring Harb Symp Quant Biol. 2010;75:501-6. doi: 10.1101/sqb.2010.75.046. Epub 2011 Apr 5. Cold Spring Harb Symp Quant Biol. 2010. PMID: 21467135
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