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Exploring the DNA-recognition potential of homeodomains.
Chu SW, Noyes MB, Christensen RG, Pierce BG, Zhu LJ, Weng Z, Stormo GD, Wolfe SA. Chu SW, et al. Genome Res. 2012 Oct;22(10):1889-98. doi: 10.1101/gr.139014.112. Epub 2012 Apr 26. Genome Res. 2012. PMID: 22539651 Free PMC article.
An improved predictive recognition model for Cys(2)-His(2) zinc finger proteins.
Gupta A, Christensen RG, Bell HA, Goodwin M, Patel RY, Pandey M, Enuameh MS, Rayla AL, Zhu C, Thibodeau-Beganny S, Brodsky MH, Joung JK, Wolfe SA, Stormo GD. Gupta A, et al. Nucleic Acids Res. 2014 Apr;42(8):4800-12. doi: 10.1093/nar/gku132. Epub 2014 Feb 12. Nucleic Acids Res. 2014. PMID: 24523353 Free PMC article.
Global analysis of Drosophila Cys₂-His₂ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants.
Enuameh MS, Asriyan Y, Richards A, Christensen RG, Hall VL, Kazemian M, Zhu C, Pham H, Cheng Q, Blatti C, Brasefield JA, Basciotta MD, Ou J, McNulty JC, Zhu LJ, Celniker SE, Sinha S, Stormo GD, Brodsky MH, Wolfe SA. Enuameh MS, et al. Genome Res. 2013 Jun;23(6):928-40. doi: 10.1101/gr.151472.112. Epub 2013 Mar 7. Genome Res. 2013. PMID: 23471540 Free PMC article.
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