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HYENA detects oncogenes activated by distal enhancers in cancer.
Yu A, Yesilkanal AE, Thakur A, Wang F, Yang Y, Phillips W, Wu X, Muir A, He X, Spitz F, Yang L. Yu A, et al. Nucleic Acids Res. 2024 Sep 9;52(16):e77. doi: 10.1093/nar/gkae646. Nucleic Acids Res. 2024. PMID: 39051548 Free PMC article.
A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases.
Zhang Y, Yang L, Kucherlapati M, Chen F, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, Sun H, Seidman J, Luquette LJ, Xi R, Chin L, Protopopov A, Li W, Park PJ, Kucherlapati R, Creighton CJ. Zhang Y, et al. Cell Rep. 2018 Jul 10;24(2):515-527. doi: 10.1016/j.celrep.2018.06.025. Cell Rep. 2018. PMID: 29996110 Free PMC article.