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HIV-1 capsid and viral DNA integration.
Dwivedi R, Prakash P, Kumbhar BV, Balasubramaniam M, Dash C. Dwivedi R, et al. mBio. 2024 Jan 16;15(1):e0021222. doi: 10.1128/mbio.00212-22. Epub 2023 Dec 12. mBio. 2024. PMID: 38085100 Free PMC article. Review.
Cyclophilin A facilitates HIV-1 integration.
Padron A, Dwivedi R, Chakraborty R, Prakash P, Kim K, Shi J, Ahn J, Pandhare J, Luban J, Aiken C, Balasubramaniam M, Dash C. Padron A, et al. J Virol. 2024 Nov 19;98(11):e0094724. doi: 10.1128/jvi.00947-24. Epub 2024 Oct 31. J Virol. 2024. PMID: 39480090
HIV-1 binds dynein directly to hijack microtubule transport machinery.
Badieyan S, Lichon D, Andreas MP, Gillies JP, Peng W, Shi J, DeSantis ME, Aiken CR, Böcking T, Giessen TW, Campbell EM, Cianfrocco MA. Badieyan S, et al. bioRxiv [Preprint]. 2023 Dec 2:2023.08.29.555335. doi: 10.1101/2023.08.29.555335. bioRxiv. 2023. PMID: 37693451 Free PMC article. Preprint.
HIV-1 Preintegration Complex Preferentially Integrates the Viral DNA into Nucleosomes Containing Trimethylated Histone 3-Lysine 36 Modification and Flanking Linker DNA.
Sapp N, Burge N, Cox K, Prakash P, Balasubramaniam M, Thapa S, Christensen D, Li M, Linderberger J, Kvaratskhelia M, Pandhare J, Craigie R, Poirier MG, Dash C. Sapp N, et al. J Virol. 2022 Sep 28;96(18):e0101122. doi: 10.1128/jvi.01011-22. Epub 2022 Sep 12. J Virol. 2022. PMID: 36094316 Free PMC article.
Three Prime Repair Exonuclease 1 preferentially degrades the integration-incompetent HIV-1 DNA through favorable kinetics, thermodynamic, structural and conformational properties.
Prakash P, Khodke P, Balasubramaniam M, Davids BO, Hollis T, Davis J, Pandhare J, Kumbhar B, Dash C. Prakash P, et al. bioRxiv [Preprint]. 2024 Mar 19:2024.03.19.585766. doi: 10.1101/2024.03.19.585766. bioRxiv. 2024. Update in: J Biol Chem. 2024 Jul;300(7):107438. doi: 10.1016/j.jbc.2024.107438 PMID: 38562877 Free PMC article. Updated. Preprint.