R01 HG008613/HG/NHGRI NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2016	1
2017	1
2018	1
2022	1
2023	3
2024	2
2025	0

1

Uncovering a mammalian neural-specific poly(A) binding protein with unique properties.

Sharma S, Kajjo S, Harra Z, Hasaj B, Delisle V, Ray D, Gutierrez RL, Carrier I, Kleinman C, Morris Q, Hughes TR, McInnes R, Fabian MR. Sharma S, et al. Genes Dev. 2023 Aug 1;37(15-16):760-777. doi: 10.1101/gad.350597.123. Epub 2023 Sep 13. Genes Dev. 2023. PMID: 37704377 Free PMC article.

2

The human genome contains over a million autonomous exons.

Stepankiw N, Yang AWH, Hughes TR. Stepankiw N, et al. Genome Res. 2023 Dec 1;33(11):1865-1878. doi: 10.1101/gr.277792.123. Genome Res. 2023. PMID: 37945377 Free PMC article.

3

RNA-binding proteins that lack canonical RNA-binding domains are rarely sequence-specific.

Ray D, Laverty KU, Jolma A, Nie K, Samson R, Pour SE, Tam CL, von Krosigk N, Nabeel-Shah S, Albu M, Zheng H, Perron G, Lee H, Najafabadi H, Blencowe B, Greenblatt J, Morris Q, Hughes TR. Ray D, et al. Sci Rep. 2023 Mar 31;13(1):5238. doi: 10.1038/s41598-023-32245-9. Sci Rep. 2023. PMID: 37002329 Free PMC article.

4

At-RS31 orchestrates hierarchical cross-regulation of splicing factors and integrates alternative splicing with TOR-ABA pathways.

Köster T, Venhuizen P, Lewinski M, Petrillo E, Marquez Y, Fuchs A, Ray D, Nimeth BA, Riegler S, Franzmeier S, Zheng H, Hughes T, Morris Q, Barta A, Staiger D, Kalyna M. Köster T, et al. bioRxiv [Preprint]. 2024 Dec 7:2024.12.04.626797. doi: 10.1101/2024.12.04.626797. bioRxiv. 2024. PMID: 39677721 Free PMC article. Preprint.

5

PRIESSTESS: interpretable, high-performing models of the sequence and structure preferences of RNA-binding proteins.

Laverty KU, Jolma A, Pour SE, Zheng H, Ray D, Morris Q, Hughes TR. Laverty KU, et al. Nucleic Acids Res. 2022 Oct 28;50(19):e111. doi: 10.1093/nar/gkac694. Nucleic Acids Res. 2022. PMID: 36018788 Free PMC article.

6

Reconstructing the sequence specificities of RNA-binding proteins across eukaryotes.

Sasse A, Ray D, Laverty KU, Tam CL, Albu M, Zheng H, Lyudovyk O, Dalal T, Nie K, Magis C, Notredame C, Weirauch MT, Hughes TR, Morris Q. Sasse A, et al. bioRxiv [Preprint]. 2024 Oct 18:2024.10.15.618476. doi: 10.1101/2024.10.15.618476. bioRxiv. 2024. PMID: 39464061 Free PMC article. Preprint.

7

RNAcompete methodology and application to determine sequence preferences of unconventional RNA-binding proteins.

Ray D, Ha KCH, Nie K, Zheng H, Hughes TR, Morris QD. Ray D, et al. Methods. 2017 Apr 15;118-119:3-15. doi: 10.1016/j.ymeth.2016.12.003. Epub 2016 Dec 10. Methods. 2017. PMID: 27956239 Free PMC article.

8

A Chemical Biology Approach to Model Pontocerebellar Hypoplasia Type 1B (PCH1B).

François-Moutal L, Jahanbakhsh S, Nelson ADL, Ray D, Scott DD, Hennefarth MR, Moutal A, Perez-Miller S, Ambrose AJ, Al-Shamari A, Coursodon P, Meechoovet B, Reiman R, Lyons E, Beilstein M, Chapman E, Morris QD, Van Keuren-Jensen K, Hughes TR, Khanna R, Koehler C, Jen J, Gokhale V, Khanna M. François-Moutal L, et al. ACS Chem Biol. 2018 Oct 19;13(10):3000-3010. doi: 10.1021/acschembio.8b00745. Epub 2018 Sep 6. ACS Chem Biol. 2018. PMID: 30141626 Free PMC article.

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