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Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci in situ.
Tsue AF, Kania EE, Lei DQ, Fields R, McGann CD, Hershberg E, Deng X, Kihiu M, Ong SE, Disteche CM, Kugel S, Beliveau BJ, Schweppe DK, Shechner DM. Tsue AF, et al. bioRxiv [Preprint]. 2023 Jan 20:2023.01.19.524825. doi: 10.1101/2023.01.19.524825. bioRxiv. 2023. PMID: 36711823 Free PMC article. Preprint.
DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci.
Liu Y, McGann CD, Krebs M, Perkins TA Jr, Fields R, Camplisson CK, Nwizugbo DZ, Hsu C, Avanessian SC, Tsue AF, Kania EE, Shechner DM, Beliveau BJ, Schweppe DK. Liu Y, et al. bioRxiv [Preprint]. 2024 Jul 29:2024.07.24.604987. doi: 10.1101/2024.07.24.604987. bioRxiv. 2024. PMID: 39091817 Free PMC article. Preprint.
Nascent transcript O-MAP reveals the molecular architecture of a single-locus subnuclear compartment built by RBM20 and the TTN RNA.
Kania EE, Fenix A, Marciniak DM, Lin Q, Bianchi S, Hristov B, Li S, Camplisson CK, Fields R, Beliveau BJ, Schweppe DK, Noble WS, Ong SE, Bertero A, Murry CE, Shechner DM. Kania EE, et al. bioRxiv [Preprint]. 2024 Nov 13:2024.11.05.622011. doi: 10.1101/2024.11.05.622011. bioRxiv. 2024. PMID: 39574693 Free PMC article. Preprint.