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Page 1
Engineering the future of 3D pathology.
Liu JT, Chow SS, Colling R, Downes MR, Farré X, Humphrey P, Janowczyk A, Mirtti T, Verrill C, Zlobec I, True LD. Liu JT, et al. J Pathol Clin Res. 2024 Jan;10(1):e347. doi: 10.1002/cjp2.347. Epub 2023 Nov 2. J Pathol Clin Res. 2024. PMID: 37919231 Free PMC article.
The prognostic value of tumor-stroma ratio and a newly developed computer-aided quantitative analysis of routine H&E slides in high-grade serous ovarian cancer.
van Wagensveld L, Walker C, Hahn K, Sanders J, Kruitwagen R, van der Aa M, Sonke G, Rottenberg S, Van de Vijver K, Janowczyk A, Horlings H. van Wagensveld L, et al. Res Sq [Preprint]. 2023 Nov 14:rs.3.rs-3511087. doi: 10.21203/rs.3.rs-3511087/v1. Res Sq. 2023. PMID: 38014112 Free PMC article. Preprint.
An end-to-end workflow for non-destructive 3D pathology.
Bishop KW, Barner LAE, Han Q, Baraznenok E, Lan L, Poudel C, Gao G, Serafin RB, Chow SSL, Glaser AK, Janowczyk A, Brenes D, Huang H, Miyasato D, True LD, Kang S, Vaughan JC, Liu JTC. Bishop KW, et al. bioRxiv [Preprint]. 2023 Aug 6:2023.08.03.551845. doi: 10.1101/2023.08.03.551845. bioRxiv. 2023. Update in: Nat Protoc. 2024 Apr;19(4):1122-1148. doi: 10.1038/s41596-023-00934-4 PMID: 37577615 Free PMC article. Updated. Preprint.
Clinical Relevance of Computationally Derived Tubular Features: Spatial Relationships and the Development of Tubulointerstitial Scarring in MCD/FSGS.
Fan F, Liu Q, Zee J, Ozeki T, Demeke D, Yang Y, Farris AB, Wang B, Shah M, Jacobs J, Mariani L, Lafata K, Rubin J, Chen Y, Holzman L, Hodgin JB, Madabhushi A, Barisoni L, Janowczyk A. Fan F, et al. medRxiv [Preprint]. 2024 Jul 21:2024.07.19.24310619. doi: 10.1101/2024.07.19.24310619. medRxiv. 2024. PMID: 39072032 Free PMC article. Preprint.
Visual Assessment of 2-Dimensional Levels Within 3-Dimensional Pathology Data Sets of Prostate Needle Biopsies Reveals Substantial Spatial Heterogeneity.
Koyuncu C, Janowczyk A, Farre X, Pathak T, Mirtti T, Fernandez PL, Pons L, Reder NP, Serafin R, Chow SSL, Viswanathan VS, Glaser AK, True LD, Liu JTC, Madabhushi A. Koyuncu C, et al. Lab Invest. 2023 Dec;103(12):100265. doi: 10.1016/j.labinv.2023.100265. Epub 2023 Oct 18. Lab Invest. 2023. PMID: 37858679 Free PMC article.