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Page 1
Federated Galaxy: Biomedical Computing at the Frontier.
Afgan E, Jalili V, Goonasekera N, Taylor J, Goecks J. Afgan E, et al. IEEE Int Conf Cloud Comput. 2018 Jul;2018:10.1109/cloud.2018.00124. doi: 10.1109/cloud.2018.00124. Epub 2018 Sep 10. IEEE Int Conf Cloud Comput. 2018. PMID: 34386295 Free PMC article.
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. Afgan E, et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W3-W10. doi: 10.1093/nar/gkw343. Epub 2016 May 2. Nucleic Acids Res. 2016. PMID: 27137889 Free PMC article.
Ten simple rules for reproducible computational research.
Sandve GK, Nekrutenko A, Taylor J, Hovig E. Sandve GK, et al. PLoS Comput Biol. 2013 Oct;9(10):e1003285. doi: 10.1371/journal.pcbi.1003285. Epub 2013 Oct 24. PLoS Comput Biol. 2013. PMID: 24204232 Free PMC article. No abstract available.
Harnessing cloud computing with Galaxy Cloud.
Afgan E, Baker D, Coraor N, Goto H, Paul IM, Makova KD, Nekrutenko A, Taylor J. Afgan E, et al. Nat Biotechnol. 2011 Nov 8;29(11):972-4. doi: 10.1038/nbt.2028. Nat Biotechnol. 2011. PMID: 22068528 Free PMC article. No abstract available.
Using galaxy to perform large-scale interactive data analyses.
Taylor J, Schenck I, Blankenberg D, Nekrutenko A. Taylor J, et al. Curr Protoc Bioinformatics. 2007 Sep;Chapter 10:Unit 10.5. doi: 10.1002/0471250953.bi1005s19. Curr Protoc Bioinformatics. 2007. PMID: 18428782 Free PMC article.
Wrangling Galaxy's reference data.
Blankenberg D, Johnson JE; Galaxy Team; Taylor J, Nekrutenko A. Blankenberg D, et al. Bioinformatics. 2014 Jul 1;30(13):1917-9. doi: 10.1093/bioinformatics/btu119. Epub 2014 Feb 28. Bioinformatics. 2014. PMID: 24585771 Free PMC article.
NGS analyses by visualization with Trackster.
Goecks J, Coraor N; Galaxy Team; Nekrutenko A, Taylor J. Goecks J, et al. Nat Biotechnol. 2012 Nov;30(11):1036-9. doi: 10.1038/nbt.2404. Nat Biotechnol. 2012. PMID: 23138293 Free PMC article. No abstract available.
The Bioinformatics Open Source Conference (BOSC) 2013.
Harris NL, Cock PJ, Chapman BA, Goecks J, Hotz HR, Lapp H. Harris NL, et al. Bioinformatics. 2015 Jan 15;31(2):299-300. doi: 10.1093/bioinformatics/btu413. Epub 2014 Jul 14. Bioinformatics. 2015. PMID: 25024288 Free PMC article.
18 results