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Transcriptional network dynamics in macrophage activation.
Nilsson R, Bajic VB, Suzuki H, di Bernardo D, Björkegren J, Katayama S, Reid JF, Sweet MJ, Gariboldi M, Carninci P, Hayashizaki Y, Hume DA, Tegner J, Ravasi T. Nilsson R, et al. Genomics. 2006 Aug;88(2):133-42. doi: 10.1016/j.ygeno.2006.03.022. Epub 2006 May 12. Genomics. 2006. PMID: 16698233 Free article.
A multi-step approach to time series analysis and gene expression clustering.
Amato R, Ciaramella A, Deniskina N, Del Mondo C, di Bernardo D, Donalek C, Longo G, Mangano G, Miele G, Raiconi G, Staiano A, Tagliaferri R. Amato R, et al. Bioinformatics. 2006 Mar 1;22(5):589-96. doi: 10.1093/bioinformatics/btk026. Epub 2006 Jan 5. Bioinformatics. 2006. PMID: 16397005
How to infer gene networks from expression profiles.
Bansal M, Belcastro V, Ambesi-Impiombato A, di Bernardo D. Bansal M, et al. Mol Syst Biol. 2007;3:78. doi: 10.1038/msb4100120. Epub 2007 Feb 13. Mol Syst Biol. 2007. PMID: 17299415 Free PMC article.