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5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic biomarkers for human cancers.
Li W, Zhang X, Lu X, You L, Song Y, Luo Z, Zhang J, Nie J, Zheng W, Xu D, Wang Y, Dong Y, Yu S, Hong J, Shi J, Hao H, Luo F, Hua L, Wang P, Qian X, Yuan F, Wei L, Cui M, Zhang T, Liao Q, Dai M, Liu Z, Chen G, Meckel K, Adhikari S, Jia G, Bissonnette MB, Zhang X, Zhao Y, Zhang W, He C, Liu J. Li W, et al. Cell Res. 2017 Oct;27(10):1243-1257. doi: 10.1038/cr.2017.121. Epub 2017 Sep 19. Cell Res. 2017. PMID: 28925386 Free PMC article.
LABS: linear amplification-based bisulfite sequencing for ultrasensitive cancer detection from cell-free DNA.
Cui XL, Nie J, Zhu H, Kowitwanich K, Beadell AV, West-Szymanski DC, Zhang Z, Dougherty U, Kwesi A, Deng Z, Li Y, Meng D, Roggin K, Barry T, Owyang R, Fefferman B, Zeng C, Gao L, Zhao CWT, Malina Y, Wei J, Weigert M, Kang W, Goel A, Chiu BC, Bissonnette M, Zhang W, Chen M, He C. Cui XL, et al. Genome Biol. 2024 Jun 14;25(1):157. doi: 10.1186/s13059-024-03262-2. Genome Biol. 2024. PMID: 38877540 Free PMC article.
Upregulation of polycistronic microRNA-143 and microRNA-145 in colonocytes suppresses colitis and inflammation-associated colon cancer.
Dougherty U, Mustafi R, Zhu H, Zhu X, Deb D, Meredith SC, Ayaloglu-Butun F, Fletcher M, Sanchez A, Pekow J, Deng Z, Amini N, Konda VJ, Rao VL, Sakuraba A, Kwesi A, Kupfer SS, Fichera A, Joseph L, Hart J, He F, He TC, West-Szymanski D, Li YC, Bissonnette M. Dougherty U, et al. Epigenetics. 2021 Dec;16(12):1317-1334. doi: 10.1080/15592294.2020.1863117. Epub 2020 Dec 28. Epigenetics. 2021. PMID: 33356812 Free PMC article.
Western Diet Promotes Intestinal Colonization by Collagenolytic Microbes and Promotes Tumor Formation After Colorectal Surgery.
Gaines S, van Praagh JB, Williamson AJ, Jacobson RA, Hyoju S, Zaborin A, Mao J, Koo HY, Alpert L, Bissonnette M, Weichselbaum R, Gilbert J, Chang E, Hyman N, Zaborina O, Shogan BD, Alverdy JC. Gaines S, et al. Gastroenterology. 2020 Mar;158(4):958-970.e2. doi: 10.1053/j.gastro.2019.10.020. Epub 2019 Oct 23. Gastroenterology. 2020. PMID: 31655031 Free PMC article.
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