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Multi-sample non-negative spatial factorization.
Wang Y, Woyshner K, Sriworarat C, Stein-O'Brien G, Goff LA, Hansen KD. Wang Y, et al. bioRxiv [Preprint]. 2024 Nov 27:2024.07.01.599554. doi: 10.1101/2024.07.01.599554. bioRxiv. 2024. PMID: 39005356 Free PMC article. Preprint.
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS.
Johnson JAI, Tsang AP, Mitchell JT, Zhou DL, Bowden J, Davis-Marcisak E, Sherman T, Liefeld T, Loth M, Goff LA, Zimmerman JW, Kinny-Köster B, Jaffee EM, Tamayo P, Mesirov JP, Reich M, Fertig EJ, Stein-O'Brien GL. Johnson JAI, et al. Nat Protoc. 2023 Dec;18(12):3690-3731. doi: 10.1038/s41596-023-00892-x. Epub 2023 Nov 21. Nat Protoc. 2023. PMID: 37989764 Free PMC article. Review.