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Spatial epigenome-transcriptome co-profiling of mammalian tissues.
Zhang D, Deng Y, Kukanja P, Agirre E, Bartosovic M, Dong M, Ma C, Ma S, Su G, Bao S, Liu Y, Xiao Y, Rosoklija GB, Dwork AJ, Mann JJ, Leong KW, Boldrini M, Wang L, Haeussler M, Raphael BJ, Kluger Y, Castelo-Branco G, Fan R. Zhang D, et al. Nature. 2023 Apr;616(7955):113-122. doi: 10.1038/s41586-023-05795-1. Epub 2023 Mar 15. Nature. 2023. PMID: 36922587 Free PMC article.
Spatial profiling of chromatin accessibility in mouse and human tissues.
Deng Y, Bartosovic M, Ma S, Zhang D, Kukanja P, Xiao Y, Su G, Liu Y, Qin X, Rosoklija GB, Dwork AJ, Mann JJ, Xu ML, Halene S, Craft JE, Leong KW, Boldrini M, Castelo-Branco G, Fan R. Deng Y, et al. Nature. 2022 Sep;609(7926):375-383. doi: 10.1038/s41586-022-05094-1. Epub 2022 Aug 17. Nature. 2022. PMID: 35978191 Free PMC article.
Spatial dynamics of mammalian brain development and neuroinflammation by multimodal tri-omics mapping.
Zhang D, Rubio Rodríguez-Kirby LA, Lin Y, Song M, Wang L, Wang L, Kanatani S, Jimenez-Beristain T, Dang Y, Zhong M, Kukanja P, Wang S, Chen XL, Gao F, Wang D, Xu H, Lou X, Liu Y, Chen J, Sestan N, Uhlén P, Kriegstein A, Zhao H, Castelo-Branco G, Fan R. Zhang D, et al. bioRxiv [Preprint]. 2024 Jul 28:2024.07.28.605493. doi: 10.1101/2024.07.28.605493. bioRxiv. 2024. PMID: 39091821 Free PMC article. Preprint.
Spatial multi-omics sequencing for fixed tissue via DBiT-seq.
Su G, Qin X, Enninful A, Bai Z, Deng Y, Liu Y, Fan R. Su G, et al. STAR Protoc. 2021 May 11;2(2):100532. doi: 10.1016/j.xpro.2021.100532. eCollection 2021 Jun 18. STAR Protoc. 2021. PMID: 34027489 Free PMC article.
Spatial-CITE-seq: spatially resolved high-plex protein and whole transcriptome co-mapping.
Liu Y, DiStasio M, Su G, Asashima H, Enninful A, Qin X, Deng Y, Bordignon P, Cassano M, Tomayko M, Xu M, Halene S, Craft JE, Hafler D, Fan R. Liu Y, et al. Res Sq [Preprint]. 2022 Mar 30:rs.3.rs-1499315. doi: 10.21203/rs.3.rs-1499315/v1. Res Sq. 2022. Update in: Nat Biotechnol. 2023 Oct;41(10):1405-1409. doi: 10.1038/s41587-023-01676-0 PMID: 35378748 Free PMC article. Updated. Preprint.