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Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing.
Xiao W, Ren L, Chen Z, Fang LT, Zhao Y, Lack J, Guan M, Zhu B, Jaeger E, Kerrigan L, Blomquist TM, Hung T, Sultan M, Idler K, Lu C, Scherer A, Kusko R, Moos M, Xiao C, Sherry ST, Abaan OD, Chen W, Chen X, Nordlund J, Liljedahl U, Maestro R, Polano M, Drabek J, Vojta P, Kõks S, Reimann E, Madala BS, Mercer T, Miller C, Jacob H, Truong T, Moshrefi A, Natarajan A, Granat A, Schroth GP, Kalamegham R, Peters E, Petitjean V, Walton A, Shen TW, Talsania K, Vera CJ, Langenbach K, de Mars M, Hipp JA, Willey JC, Wang J, Shetty J, Kriga Y, Raziuddin A, Tran B, Zheng Y, Yu Y, Cam M, Jailwala P, Nguyen C, Meerzaman D, Chen Q, Yan C, Ernest B, Mehra U, Jensen RV, Jones W, Li JL, Papas BN, Pirooznia M, Chen YC, Seifuddin F, Li Z, Liu X, Resch W, Wang J, Wu L, Yavas G, Miles C, Ning B, Tong W, Mason CE, Donaldson E, Lababidi S, Staudt LM, Tezak Z, Hong H, Wang C, Shi L. Xiao W, et al. Among authors: vera cj. Nat Biotechnol. 2021 Sep;39(9):1141-1150. doi: 10.1038/s41587-021-00994-5. Epub 2021 Sep 9. Nat Biotechnol. 2021. PMID: 34504346 Free PMC article.
Insights into the coordination chemistry of antineoplastic doxorubicin with 3d-transition metal ions Zn2+, Cu2+, and VO2+: a study using well-calibrated thermodynamic cycles and chemical interaction quantum chemistry models.
Reyna-Luna J, Soriano-Agueda L, Vera CJ, Franco-Pérez M. Reyna-Luna J, et al. Among authors: vera cj. J Comput Aided Mol Des. 2023 Jul;37(7):279-299. doi: 10.1007/s10822-023-00506-4. Epub 2023 May 28. J Comput Aided Mol Des. 2023. PMID: 37245168
Intrapleural Fibrinolytic Interventions for Retained Hemothoraces in Rabbits.
De Vera CJ, Jacob J, Sarva K, Christudas S, Emerine RL, Florence JM, Akiode O, Gorthy TV, Tucker TA, Singh KP, Azghani AO, Komissarov AA, Florova G, Idell S. De Vera CJ, et al. Int J Mol Sci. 2024 Aug 12;25(16):8778. doi: 10.3390/ijms25168778. Int J Mol Sci. 2024. PMID: 39201465 Free PMC article.
A Novel Rabbit Model of Retained Hemothorax with Pleural Organization.
De Vera CJ, Emerine RL, Girard RA, Sarva K, Jacob J, Azghani AO, Florence JM, Cook A, Norwood S, Singh KP, Komissarov AA, Florova G, Idell S. De Vera CJ, et al. Int J Mol Sci. 2023 Dec 29;25(1):470. doi: 10.3390/ijms25010470. Int J Mol Sci. 2023. PMID: 38203639 Free PMC article.
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing.
Fang LT, Zhu B, Zhao Y, Chen W, Yang Z, Kerrigan L, Langenbach K, de Mars M, Lu C, Idler K, Jacob H, Zheng Y, Ren L, Yu Y, Jaeger E, Schroth GP, Abaan OD, Talsania K, Lack J, Shen TW, Chen Z, Stanbouly S, Tran B, Shetty J, Kriga Y, Meerzaman D, Nguyen C, Petitjean V, Sultan M, Cam M, Mehta M, Hung T, Peters E, Kalamegham R, Sahraeian SME, Mohiyuddin M, Guo Y, Yao L, Song L, Lam HYK, Drabek J, Vojta P, Maestro R, Gasparotto D, Kõks S, Reimann E, Scherer A, Nordlund J, Liljedahl U, Jensen RV, Pirooznia M, Li Z, Xiao C, Sherry ST, Kusko R, Moos M, Donaldson E, Tezak Z, Ning B, Tong W, Li J, Duerken-Hughes P, Catalanotti C, Maheshwari S, Shuga J, Liang WS, Keats J, Adkins J, Tassone E, Zismann V, McDaniel T, Trent J, Foox J, Butler D, Mason CE, Hong H, Shi L, Wang C, Xiao W; Somatic Mutation Working Group of Sequencing Quality Control Phase II Consortium. Fang LT, et al. Nat Biotechnol. 2021 Sep;39(9):1151-1160. doi: 10.1038/s41587-021-00993-6. Epub 2021 Sep 9. Nat Biotechnol. 2021. PMID: 34504347 Free PMC article.
Tensile and tear strength of carrageenan film from Philippine eucheuma species.
Briones AV, Ambal WO, Estrella RR, Pangilinan R, De Vera CJ, Pacis RL, Rodriguez N, Villanueva MA. Briones AV, et al. Among authors: de vera cj. Mar Biotechnol (NY). 2004 Mar-Apr;6(2):148-51. doi: 10.1007/s10126-003-0005-9. Epub 2004 Apr 19. Mar Biotechnol (NY). 2004. PMID: 15085409